LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vimu4g00407	ATGACATGTGATGTGATTTTACCCCCCATGCAGGGGATCCCAGGATTTGCACTTGCACGCGCAAGATCAAATGAATCGGTTCAAAGTGGTGAAGCCCCTGCCAACTGGGAAAAGGTTCTTCAAGGAATTCGCCAAATGAGGAGTTCAGCAGATGAACATGAACCAGTTGCACACGACGAAACTGCTGATAATACTGTTCTTCCTAAGGAAAGAAGATTTGCTGTCCTTGCATCTTCCATTTTATCAAGCCAAACTAAGGGGCATGTTTCTCGTGGAGCGGCTCAATGTCTTCATGAAAATGGTCTTCTTACGGCAGAAGCAATGAACAAAGCTGATGAAGAAACCATCAAAAAGTTTATTTACCCTGTTGGATTTTATACAAGAAAAGCCAGTTACTTGAAGAAAGTTGCTAACATTTGCCTCATGAAGTATGATGGAGACATACCTAGCTCAATTGAGGAACTACTCTTGCTGCCAGGAGTAGGTCCTAAGATTGCTCATCTGGTTATGATTCGTGGATGGAACAATGTCCAAGGGATATGTGTAGATACTCACGTCCACCGCATCTGCAATCGACTTGGGTGGGTTTCGAGATCAGGCTCAAAACAGAAAACTTTGACACCAGAAGAAACCAGACAAAGGCTGCAACTATGGCTTCCGAAGGAAGAATGGGTTCCAATAAATCCTCTTTTGGTAGGATTTGGACGATCAATTTGTACTCCTCTACGACCTCACTGTGGAGAGTGTAGTGTGAGTAGCTTCTGTCCATCAGCATACAAGGAGGCTTCGAGCTTTTCATCCAAGTCCAGAAAAATTACATTGAACAAGAAGCCTTAA	837	0.4349	MTCDVILPPMQGIPGFALARARSNESVQSGEAPANWEKVLQGIRQMRSSADEHEPVAHDETADNTVLPKERRFAVLASSILSSQTKGHVSRGAAQCLHENGLLTAEAMNKADEETIKKFIYPVGFYTRKASYLKKVANICLMKYDGDIPSSIEELLLLPGVGPKIAHLVMIRGWNNVQGICVDTHVHRICNRLGWVSRSGSKQKTLTPEETRQRLQLWLPKEEWVPINPLLVGFGRSICTPLRPHCGECSVSSFCPSAYKEASSFSSKSRKITLNKKP	278

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vimu4g00407	278	SMART	endo3end	81	237	IPR003265	GO:0006284
	Vimu4g00407	278	FunFam	Endonuclease III homolog	171	261	-	-
	Vimu4g00407	278	ProSitePatterns	Endonuclease III family signature.	146	175	IPR004036	-
	Vimu4g00407	278	SMART	ccc3	238	258	IPR003651	GO:0051539
	Vimu4g00407	278	FunFam	Endonuclease III-like protein 1	68	172	-	-
	Vimu4g00407	278	Hamap	Endonuclease III-like protein 1 [NTHL1].	32	261	IPR030841	GO:0003906\|GO:0005634\|GO:0006281\|GO:0006285\|GO:0019104
	Vimu4g00407	278	PANTHER	ENDONUCLEASE III-LIKE PROTEIN 1	25	271	-	-
	Vimu4g00407	278	CDD	ENDO3c	73	235	IPR003265	GO:0006284
	Vimu4g00407	278	Gene3D	-	172	261	IPR023170	-
	Vimu4g00407	278	SUPERFAMILY	DNA-glycosylase	64	261	IPR011257	GO:0003824\|GO:0006281
	Vimu4g00407	278	Gene3D	Hypothetical protein; domain 2	61	171	-	-
	Vimu4g00407	278	Pfam	Helix-hairpin-helix motif	143	170	IPR000445	GO:0003677
	Vimu4g00407	278	Pfam	HhH-GPD superfamily base excision DNA repair protein	78	210	IPR003265	GO:0006284

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vimu4g00407	Vimu-Chr4	2902451	2905519	Dispersed/Wgd

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vimu4g00407	K10773		-	gmx:100805799	424.091

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Vimu4g00407	4	2902451	2905519	Vimu4g00407	4	2902451	2905519	ECH
	Vimu4g00407	4	2902451	2905519	Vimu5g02231	5	33553153	33558845	PCT