Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g02211 ATGATGGCGTTGCACTTGGACTTGTTTCCTTTACTCTGCGTTTTGTTTCTTTTTGTTACCTCCTTCGTCAAAGTCACTCATTCCAAGGCCATTTCATCCGTTCATGACGCTTCATTTCTCAACCGGAGCAGTTTTCCCCAAGGCTTTGTTTTCGGAGCAGCATCCTCGGCATACCAGTATGAAGGGGCTGCAAGGGAAGGTGGAAGAGGACCCAGTATATGGGATACTTTCACTCATAAATACCCACAAAAAATAAAAGACGGAAGTAACGGAGATGTAGCAGACGACTCATATCATCGGTACAAGGAGGATATTGGAATCATGAAGTACATGAATTTGGATGCTTATAGATTTTCCATTTCTTGGTCTAGGATTCTACCCAAAGGAAAGCTTAGTGCAGGTGTAAACCATGAAGGAATAAACTACTACAACAACCTTATCAACGAGCTAATGGCAAATGGTCTGCAACCATATGTGACCCTTTTTCATTGGGACGTTCCCCAAGCCTTAGAGGATGAGTATGGCGGTTTCTTAAACCCTCATATTGTAGATGATTTTAGGGACTATGCTGAAGTTTGCTTCAAGGAATTTGGTGATAGGGTAAAACGTTGGATTACTCTAAATGAACCAAGGAGTGTGAGCAAGAATGGCTATGCAAATGGTAGGTTTGCACCTGGTCGGTGTTCTGATTGGTTAAAACTGAACTGCACAGGTGGTGATTCCGGAACTGAGCCCTACGTGACTTCACACTACCAACTTCTTGCTCATGCTGCTGCTGCCAAACTGTATAAGACCAAGTATCAGGCATCTCAAAAGGGTTTAATAGGGATTACATTGAACTCTGACTGGTATGTTCCGGTTTCAAAACAGAAATCAGATCGAGATGCTGCACGTCGGGGCCTTGACTTCATTTTTGGCTGGTTTATGGAACCACTCACTAAAGGTGAGTATCCAAAGAGCATGCGATCTATGTTGGGAAACCGGCTACCAGAGTTCACCAGAGAAGAGTCCAGGCAACTCAAAGGGTCATTTGATTTTCTGGGCCTAAACTACTACTCATCCTTTTATGCTGCCCATGCACCTCACCAACTTGGTGTCAGACCAGCCTTACAAACTGATTCTCTTGTTAATGTTACAAATCAGCATAATGGCAAGCTCCTTGGTCCAATGGCTGCTTCTAACTGGTTGTGCATTTATCCACGAGGATTCCGACGACTGTTGCTTTTCATCAAGAAGCATTACAACAACCCCGTAATTTACATTACTGAAAACGGTTATGACGAGTTTGACGATCCAACACTTTCACTTGAAGAAAGCCTTCTAGATACATACAGAGTTGATTACATATACCGACATCTTTATTATCTTCAAACTGCAATCAAGGATGGTGTGAATGTGAAGGGATATTTTGTGTGGTCATTGCTGGATAACATGGAGTGGGACTCTGGCTATAGTGTGCGATTTGGACTCGTCTTTGTGGATTTCAAAGATGGCTTGAAAAGATACCCGAAATACTCGGCACATTGGTTCAAAAACTTCCTTAGTAAATCCTAG 1554 0.4279 MMALHLDLFPLLCVLFLFVTSFVKVTHSKAISSVHDASFLNRSSFPQGFVFGAASSAYQYEGAAREGGRGPSIWDTFTHKYPQKIKDGSNGDVADDSYHRYKEDIGIMKYMNLDAYRFSISWSRILPKGKLSAGVNHEGINYYNNLINELMANGLQPYVTLFHWDVPQALEDEYGGFLNPHIVDDFRDYAEVCFKEFGDRVKRWITLNEPRSVSKNGYANGRFAPGRCSDWLKLNCTGGDSGTEPYVTSHYQLLAHAAAAKLYKTKYQASQKGLIGITLNSDWYVPVSKQKSDRDAARRGLDFIFGWFMEPLTKGEYPKSMRSMLGNRLPEFTREESRQLKGSFDFLGLNYYSSFYAAHAPHQLGVRPALQTDSLVNVTNQHNGKLLGPMAASNWLCIYPRGFRRLLLFIKKHYNNPVIYITENGYDEFDDPTLSLEESLLDTYRVDYIYRHLYYLQTAIKDGVNVKGYFVWSLLDNMEWDSGYSVRFGLVFVDFKDGLKRYPKYSAHWFKNFLSKS 517
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g02211 517 Gene3D Glycosidases 29 515 - -
Vimu5g02211 517 PANTHER GLYCOSYL HYDROLASE 44 516 IPR001360 GO:0004553|GO:0005975
Vimu5g02211 517 FunFam Beta-glucosidase 12 30 516 - -
Vimu5g02211 517 ProSitePatterns Glycosyl hydrolases family 1 N-terminal signature. 49 63 IPR033132 -
Vimu5g02211 517 PRINTS Glycosyl hydrolase family 1 signature 463 480 IPR001360 GO:0004553|GO:0005975
Vimu5g02211 517 PRINTS Glycosyl hydrolase family 1 signature 419 427 IPR001360 GO:0004553|GO:0005975
Vimu5g02211 517 PRINTS Glycosyl hydrolase family 1 signature 442 453 IPR001360 GO:0004553|GO:0005975
Vimu5g02211 517 PRINTS Glycosyl hydrolase family 1 signature 487 499 IPR001360 GO:0004553|GO:0005975
Vimu5g02211 517 PRINTS Glycosyl hydrolase family 1 signature 343 357 IPR001360 GO:0004553|GO:0005975
Vimu5g02211 517 SUPERFAMILY (Trans)glycosidases 35 515 IPR017853 -
Vimu5g02211 517 Pfam Glycosyl hydrolase family 1 43 516 IPR001360 GO:0004553|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g02211 Vimu-Chr5 33383082 33386933 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g02211 16 516 Glycoside Hydrolase AT5G44640 54.473 0.0 580
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g02211 K01188 - gmx:100801874 969.148
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu5g02211 5 33383082 33386933 Vimu5g02211 5 33383082 33386933 ECH
Vimu4g00415 4 2975197 2976073 Vimu5g02211 5 33383082 33386933 PCT