Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g00415 ATGGGAAATATTAATATTGCAGGTATACAACCATATGTAACACTTTTTCACTGGGATATTCCTCAAGCTTTACAAGAAGACTACGGTGGTTTCTTAAGTCCTCTCATTGTAAATGATTTTCAAGAGTATGCGGAGCTTTGTTTCGAAGAATTTGGAGATAAGGTGAAACACTGGATTACTTTAAACGAGCCATGGTCTTTTAGTAGGGGTGGTTATGCACTTGGGAGCTTTGCACCAGGTCGATGTTCTGAATGGCTAAATCCAGAATGCACTGGTGGAGATTCAGGAACAGAACCTTATATAATTTCACATTATCAACTACTTTCTCATGCAGCAGCTGTTCAAGTGTACAAGAAAAAGTATCAGGAATCTCAAAGGGGTGTGATAGGCATAACACATGTTTCTCATTGGTTTGAGCCATTTTCAAATACCACATCAGATAAAAAAGCTGCTCAACGAGCTCTTGACTTTATGTATGGATGGTAA 486 0.3848 MGNINIAGIQPYVTLFHWDIPQALQEDYGGFLSPLIVNDFQEYAELCFEEFGDKVKHWITLNEPWSFSRGGYALGSFAPGRCSEWLNPECTGGDSGTEPYIISHYQLLSHAAAVQVYKKKYQESQRGVIGITHVSHWFEPFSNTTSDKKAAQRALDFMYGW 161
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g00415 161 Pfam Glycosyl hydrolase family 1 5 161 IPR001360 GO:0004553|GO:0005975
Vimu4g00415 161 PANTHER GLYCOSYL HYDROLASE 7 161 IPR001360 GO:0004553|GO:0005975
Vimu4g00415 161 SUPERFAMILY (Trans)glycosidases 7 161 IPR017853 -
Vimu4g00415 161 Gene3D Glycosidases 3 161 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g00415 Vimu-Chr4 2975197 2976073 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu4g00415 9 161 Glycoside Hydrolase AT5G26000 54.248 2.24e-61 194
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g00415 K01188 - var:108333517 330.487
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu4g00415 4 2975197 2976073 Vimu4g00415 4 2975197 2976073 ECH
Vimu4g00415 4 2975197 2976073 Vimu5g02211 5 33383082 33386933 PCT