Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g02209 ATGAACAAGGATATGGTATTCAGTAGCTATCAATTTCTTCTCCATGTTGGAGTCTTCACTCTCCTTGTAACCTTTTCCATTACAACCACAAAAGCCGTTCAGACCATTCTTGAGGTTTCTTCTCTTAATAGGAAGAGTTTTCCTTCAGATTTGATCTTTGGCACTGCCTCCTCAGCCTACCAGTTAAAAGACTCGATCAAGAACCATGTCATATCTTCACAGTATCTAGACATCGCCCTAAGTACGAAGGTGCTGCAAGGGAAGGAGGTAAAGGACCAAGCATATGGGATAGCTTTACTCATGAACCTTCAGTTTAGCCATTTAGAAATTTTTAATGTGTATGGTTTTTTTCATTTACCAATTGAAAGGCTAGCTGATCGTATCAATGGAGATGTAGCTGTCGATCAATATCATCGTTATGAGGAAGATGTTTGGATCATGAAGGACATGAACACTGATGCTTACAGATTCTCTATCTCGTGGTCAAGGATTTTTCCAAAAGGAAACATTATTAACTCGGATATAAACAAAGAAGGAATCAGATATTACAACAATCTCATCAACAAACTGTTGGAAAATGGTATTAAGCCATTTGTGACTCTTTTCCATTGGGATCTTCCCCAAGCCTTAGAAGATGAATACGGTGGATTTTCAAACCCTCGTATTATAAACGATTTTAAAGACTACGCAGAGATATGCTTCAAGTATTTTGGAGATAGAGTGAAACATTGGATTACTTTTAATGAGCCATGGAGTTACAGTATACGCAAAGACCCATACGTGAGCTCACACTACCAACTGCTAGCTCATGCAGCAGCTGTCAAAGTTTATAGAACCAATTATAAGGCATCTCAAAAAGGTTCGATAGGCATCAGCTTAAATTGTCTTTGGTTTATTCCGTTCTCAAATGACCCATCAGATGATGAAGCTGCCAAACGAGCTCTTGATTTCATGTTAGGAAGGTATATGCAACCACTTACAACAGGAAAGTATCCAAAAACCATGCATTCTTTGCTGGGAAACCGATTACCAGACTTCACAAAAGAGCACTCCAAGCTACTTATTGACTCGTTTGATTTTATTGGACTCAATTACTACACAACTAATTATGCTGCTAACTTATCCGTTCCAAATAAAAGCTCACCCAAAACTAGAAATTCCGATGATACTAGAGTCAAGTTTGCAACTGAACGTAACGGGACACCCATTGGACCAAGGGCTGGTTCATCTTGGCTACATGTTTATCCAAGGGGACTTAGAGAACTATTGTTGTACATCAAGAGGGAGTATAAAAACCCAGAAATTTACATAACAGAAAATGGCATAGACGAGGCCAATGATCCAACACTGTCACTTGAAGAGGCACTGATGGATACTCAAAGAATTGACTACTACTATCGCCATCTTTATTACCTTTCAAAGGCAATAAAGGATGGGGTGAACGTACGTGGATACTTTGCATGGTCGCTTCTGGACAACCTCGAATGGGATGCTGGCTACACCGTGCGCTTTGGACTTAACTTCATCGATTACAAGGATAATTTGAAAAGACACAAAAAGCTCTCTGCCCATTGGTTCAAGAATTTTCTTCAAAAACCAGAACTTCAAGAACAATCTTTAATTTAG 1626 0.3911 MNKDMVFSSYQFLLHVGVFTLLVTFSITTTKAVQTILEVSSLNRKSFPSDLIFGTASSAYQLKDSIKNHVISSQYLDIALSTKVLQGKEVKDQAYGIALLMNLQFSHLEIFNVYGFFHLPIERLADRINGDVAVDQYHRYEEDVWIMKDMNTDAYRFSISWSRIFPKGNIINSDINKEGIRYYNNLINKLLENGIKPFVTLFHWDLPQALEDEYGGFSNPRIINDFKDYAEICFKYFGDRVKHWITFNEPWSYSIRKDPYVSSHYQLLAHAAAVKVYRTNYKASQKGSIGISLNCLWFIPFSNDPSDDEAAKRALDFMLGRYMQPLTTGKYPKTMHSLLGNRLPDFTKEHSKLLIDSFDFIGLNYYTTNYAANLSVPNKSSPKTRNSDDTRVKFATERNGTPIGPRAGSSWLHVYPRGLRELLLYIKREYKNPEIYITENGIDEANDPTLSLEEALMDTQRIDYYYRHLYYLSKAIKDGVNVRGYFAWSLLDNLEWDAGYTVRFGLNFIDYKDNLKRHKKLSAHWFKNFLQKPELQEQSLI 541
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g02209 541 Gene3D Glycosidases 27 532 - -
Vimu5g02209 541 FunFam Beta-glucosidase 12 254 532 - -
Vimu5g02209 541 PANTHER GLYCOSYL HYDROLASE 46 535 IPR001360 GO:0004553|GO:0005975
Vimu5g02209 541 PRINTS Glycosyl hydrolase family 1 signature 458 469 IPR001360 GO:0004553|GO:0005975
Vimu5g02209 541 PRINTS Glycosyl hydrolase family 1 signature 503 515 IPR001360 GO:0004553|GO:0005975
Vimu5g02209 541 PRINTS Glycosyl hydrolase family 1 signature 357 371 IPR001360 GO:0004553|GO:0005975
Vimu5g02209 541 PRINTS Glycosyl hydrolase family 1 signature 435 443 IPR001360 GO:0004553|GO:0005975
Vimu5g02209 541 PRINTS Glycosyl hydrolase family 1 signature 479 496 IPR001360 GO:0004553|GO:0005975
Vimu5g02209 541 Pfam Glycosyl hydrolase family 1 116 532 IPR001360 GO:0004553|GO:0005975
Vimu5g02209 541 SUPERFAMILY (Trans)glycosidases 39 530 IPR017853 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g02209 Vimu-Chr5 33367206 33370988 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g02209 39 530 Glycoside Hydrolase AT1G26560 45.857 2.66e-153 446
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g02209 K01188 - vum:124848827 775.007
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu4g00429 4 3124923 3130997 Vimu5g02209 5 33367206 33370988 PCT