Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g00429 AATCATCACTTCATTAATTCTTCTTCTGACATGGCATACAATGCGTTTTTTCTCACGGTTGTTGCTATTGTTAGAACATTAGCATCAGTTACTCTTGCTGAACCTGTTCCTGTTGCACCTATCCTCGATGTTTCTTTCCTCAACAGAAGCACTTTTCCCCCAGGATTCCTTTTTGGGACAGCTTCTGCCGCTTACCAGTATGAAGGTGCGGCGAAGGAAGGTGGCAAAGGGCCGAGTGTATGGGATACTTTCACCCATAAACATCCAGAAATGATACAAGATAGAAGTAATGGAGATGTTGCCAATGATCAATATCACCGGTATAAGGAAGACGTTGGAATCATGAAATATATGAACTTGGATGCATACCGATTCTCTATTTCTTGGCCAAGAATTCTTCCAAAAGGAAAGCTTAGTGGTGGAATAAACCAAGAAGGAGTCAAATATTACAACAACCTCATCAACGAACTGTTGGCTAATGGTATTGAACCATTTGTCACCCTCTTCCATTGGGATCTTCCCCAGACTTTAGAAGATGAGTATGGTGGCTTCCTAAGTCCTCGCATTATAAACGACTTTCAAGATTACGCAGAAGTTTGCTTCAAAGAGTTTGGAGACAGAGTGAAGTATTGGATTACTGTAAACGAGCCATGGACTTATAGTACATTTGGCTATGCAACTGGAGTCATGCCACCAAATCGATGTTCTAAATGGTTAGATCCAAAATGTGTTCATGGTGATTCTGGGAAAGAACCTTATCTAGTTTCACATCACCTTCTTCTTGCTCATGCAGCCACTGTCCAAGTGTATCAAAAAGGAGTAATAGGCATAACCCTTGTGTCTAATTGGTTTGAACCATTGTCAGAAAACAAATTAGATAAAAGTGCTTCTGAGCGAGCTCTAGCTTTCATGCTGGGATGGTTTGTGGAACCATTAACATCAGGAAAGTATCCGAAAAGCATGCGTTCTCTTGTTGGTAATCGATTACCAGAATTCTCCCAAGAACAAATCAAAGTCGTGAATGGTTCATTTGATTTTATTGGATTAAACTATTACACCTCTTACTATGCTACCCATGCACCTCGGCTAGGCACTGTTAAACCTAATTATAATACAGATGCCAATACCAATCTTACAACTGAACGCAATGGGATTCCAATAGGTCCAACGGCTGCTTCTAGCTGGTTGTATGTGTATCCGCGAGGCATTAGAGAATTATTGTTGTACGCTAAACAAAAGTACAACAATCCATTAATTTACATAACTGAAAATGGTGTTGATGAATTCAATGATCCAACGCTATCGTTGGAAGAGTCTCTTCTAGATACGTTGAGGATAGACTATCATTATCGTCATCTATTTTATCTTCATTCAGCAATTAGGGATGGCGTAAATATAAAAGGATATTTTGCATGGTCATTGCTTGACAACTTTGAATGGAACAATGGTTATACAGTGAGATTCGGAATCAACTTTGTGGATTACAAGAATGGCTTCAAGCGATATCAAAAACTCTCTGCAAAATGGTTTAGGAATTTTCTAAAAAGATACTGA 1554 0.3919 NHHFINSSSDMAYNAFFLTVVAIVRTLASVTLAEPVPVAPILDVSFLNRSTFPPGFLFGTASAAYQYEGAAKEGGKGPSVWDTFTHKHPEMIQDRSNGDVANDQYHRYKEDVGIMKYMNLDAYRFSISWPRILPKGKLSGGINQEGVKYYNNLINELLANGIEPFVTLFHWDLPQTLEDEYGGFLSPRIINDFQDYAEVCFKEFGDRVKYWITVNEPWTYSTFGYATGVMPPNRCSKWLDPKCVHGDSGKEPYLVSHHLLLAHAATVQVYQKGVIGITLVSNWFEPLSENKLDKSASERALAFMLGWFVEPLTSGKYPKSMRSLVGNRLPEFSQEQIKVVNGSFDFIGLNYYTSYYATHAPRLGTVKPNYNTDANTNLTTERNGIPIGPTAASSWLYVYPRGIRELLLYAKQKYNNPLIYITENGVDEFNDPTLSLEESLLDTLRIDYHYRHLFYLHSAIRDGVNIKGYFAWSLLDNFEWNNGYTVRFGINFVDYKNGFKRYQKLSAKWFRNFLKRY 517
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g00429 517 Gene3D Glycosidases 35 516 - -
Vimu4g00429 517 ProSitePatterns Glycosyl hydrolases family 1 N-terminal signature. 56 70 IPR033132 -
Vimu4g00429 517 PANTHER GLYCOSYL HYDROLASE 51 516 IPR001360 GO:0004553|GO:0005975
Vimu4g00429 517 PRINTS Glycosyl hydrolase family 1 signature 463 480 IPR001360 GO:0004553|GO:0005975
Vimu4g00429 517 PRINTS Glycosyl hydrolase family 1 signature 343 357 IPR001360 GO:0004553|GO:0005975
Vimu4g00429 517 PRINTS Glycosyl hydrolase family 1 signature 419 427 IPR001360 GO:0004553|GO:0005975
Vimu4g00429 517 PRINTS Glycosyl hydrolase family 1 signature 442 453 IPR001360 GO:0004553|GO:0005975
Vimu4g00429 517 PRINTS Glycosyl hydrolase family 1 signature 487 499 IPR001360 GO:0004553|GO:0005975
Vimu4g00429 517 Pfam Glycosyl hydrolase family 1 49 515 IPR001360 GO:0004553|GO:0005975
Vimu4g00429 517 FunFam Beta-glucosidase 12 39 516 - -
Vimu4g00429 517 SUPERFAMILY (Trans)glycosidases 40 515 IPR017853 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g00429 Vimu-Chr4 3124923 3130997 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu4g00429 16 514 Glycoside Hydrolase AT5G44640 52.465 0.0 555
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g00429 K01188 - gmx:100811884 846.269
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu4g00429 4 3124923 3130997 Vimu4g00429 4 3124923 3130997 ECH
Vimu4g00429 4 3124923 3130997 Vimu5g02209 5 33367206 33370988 PCT