Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g02204 ATGCAGAGGGCACCACTTGCACATTCCCATGAATTCGCCTTGAAGGAGACCTCTCCCAACATTGGGGCAGGGGCAGTGACAAGGGACAAGCTGTCATGCACCTATGACCTTGTTGAACAGATGCAGTATCTCTATGTTCGTGTGGTGAAAGCCATGGACTTACCTGCAAAAGATGTCACCGGAAGCCTCGATCCTTATGTCGAAGTGAAGCTTGGAAACTTCAAGGGAGTGACCAAGCATTTTGAGAAGAAGTCGAACCCCGAGTGGAATCAGGTCTTTGCCTTCTCAAAAGATCGGATTCAAGCCTCAGTGTTGGAGGTAATTGTGAAAGATAAGGATGTTATTTCAGACGACTTTGTGGGGAGGTTGTGGTTTGATCTGAATGAGATCCCAAGACGTGTTCCCCCAGACAGTCCTTTGGCTCCACAGTGGTACAGACTGGAAGATCGCAAGGGTGTAAAGGTCAAAGGAGAGTTAATGCTCGCAGTTTGGATGGGGACTCAAGCAGATGAGGCATTTCCTGATTCTTGGCACTCTGATGCAGCCATGGTTGGCTCCGAAGCAGTTGCCAACATAAGGTCAAAAGTTTACCTCTCTCCCAAGCTCTGGTATGTCAGGGTCAATGTGATTGAAGCACAGGATTTGATTCCTACTGACAAGAGCCGGTATCCTGAAGTTTTTGTGAAGGTTAATCTTGGGAGCAAGTTTGTGAGAACAAGAGTGTCTCAAAGTAAAAACATAAGTCCTATGTGGAACGAGGATTTGATGCTGGTTGCTGCGGAGCCGTTTGAGGATCCCTTGATTCTGACCGTGGAAGACAGGGTTGGACCAAACAAAGATGAGATTCTGGGAAGGTGTGTGATCCCTTTGCAGATTGTGCAACGGAGGCTGGACCATAAGCCTGTGAACAGCAGGTGGTTTAATCTTGAGAAGCATGCGGTTGTTGAAGGGGAGAAGGAGAGTAAATTCGCAAGCAAGATACATTTGAGGGTGTGCTTGGATGGGGGGTTCCATGTGTTGGATGAGTCAACTCATTACAGCAGTGATCTTAGACCAACTGCTAAGCAGCTATGGAAGCCTAGCATTGGAATTCTAGAAGTGGGGATTATAAGTGCACTAGGGCTTATGCCGATGAAGACAAGAGATGGCAGAGGAACCACAGATGCTTATTGTGTGGCAAAATATGGCCAGAAGTGGATCCGCACTAGGACTATTGTAGATAGCTTCACTCCAAAGTGGAATGAGCAATACACTTGGGAAGTGTTTGATCCATGCACTGTTATTACCATAGGAGTCTTTGACAATGGTCGTGTAGGTGGAGGAGATAGAGCTAGTGAAACAAAGGATTCTAGGATAGGGAAGGTGAGAATCAGGCTATCCACACTTGAAGCTGATAGAGTTTACACACATTCATATCCTCTTTTAGTACTTCATACTTCAGGTTTGAAGAAAACAGGAGAAGTGCAATTGGCCGTGAGGTTCACAAGCTCATCTTTCATCAATATGTTGTACATGTATTCCCAGCCTCTGCTGCCAAAGATGCACTACATCCATCCTTTATCTGTGATTCAGCTGGACAGTCTGAGGCATCAGGCCATGCAGATTGTATCAATGAGGTTGAGCAGAGCTGAGCCACCCCTAAGGAAAGAGGTTGTAGAATACATGCTTGATGTGGATTCGCATATGTGGAGTATGAGAAGGAGCAAAGCCAATTTCTTCAGGATAATGAAAGTTCTAGGTGGTTTGATAGCCTTTGGGAGGTGGTTTGATCAGATATGCAACTGGAAAAACCCCATCACCACCATTCTAATTCATGTCCTTTTCATAATATTGGTTCTTTACCCTGAGCTAATACTTCCCACAATCTTCTTGTACCTGTTCTTGATTGGAATCTGGAACTTCAGATGGAGGCCTAGACACCCTCCACACATGGATACCAGGCTGTCTCATGCTGATGCTGCTCATCCTGATGAATTAGATGAAGAGTTTGATTCATTCCCAACTTCACGATCACCGGATATTGTTAGGATGAGATATGACCGTTTAAGAAGCATTGCAGGGAGAGTCCAAAGTGTTGTAGGAGACTTAGGTACACAAGGAGAAAGGTTCCAGAGTCTGCTAAGCTGGAGAGATCCAAGGGCTACCACACTCTTTCTCACATTCTGTTTCATTGCTGCTATAGTTCTCTATGTTACTCCCTTTCAAGTTGTGTCACTTCTCATTGGCTTCTACATGCTTAGACACCCCAGATTCCGCAGGAAACTTCCATCAGTCCCACTCAACTTCTTCAGAAGGATGCCTGCTAGATCAGACAGCATGTTGTAA 2325 0.4551 MQRAPLAHSHEFALKETSPNIGAGAVTRDKLSCTYDLVEQMQYLYVRVVKAMDLPAKDVTGSLDPYVEVKLGNFKGVTKHFEKKSNPEWNQVFAFSKDRIQASVLEVIVKDKDVISDDFVGRLWFDLNEIPRRVPPDSPLAPQWYRLEDRKGVKVKGELMLAVWMGTQADEAFPDSWHSDAAMVGSEAVANIRSKVYLSPKLWYVRVNVIEAQDLIPTDKSRYPEVFVKVNLGSKFVRTRVSQSKNISPMWNEDLMLVAAEPFEDPLILTVEDRVGPNKDEILGRCVIPLQIVQRRLDHKPVNSRWFNLEKHAVVEGEKESKFASKIHLRVCLDGGFHVLDESTHYSSDLRPTAKQLWKPSIGILEVGIISALGLMPMKTRDGRGTTDAYCVAKYGQKWIRTRTIVDSFTPKWNEQYTWEVFDPCTVITIGVFDNGRVGGGDRASETKDSRIGKVRIRLSTLEADRVYTHSYPLLVLHTSGLKKTGEVQLAVRFTSSSFINMLYMYSQPLLPKMHYIHPLSVIQLDSLRHQAMQIVSMRLSRAEPPLRKEVVEYMLDVDSHMWSMRRSKANFFRIMKVLGGLIAFGRWFDQICNWKNPITTILIHVLFIILVLYPELILPTIFLYLFLIGIWNFRWRPRHPPHMDTRLSHADAAHPDELDEEFDSFPTSRSPDIVRMRYDRLRSIAGRVQSVVGDLGTQGERFQSLLSWRDPRATTLFLTFCFIAAIVLYVTPFQVVSLLIGFYMLRHPRFRRKLPSVPLNFFRRMPARSDSML 774
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g02204 774 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 203 354 IPR035892 -
Vimu5g02204 774 FunFam C2 domain-containing protein 346 498 - -
Vimu5g02204 774 Pfam C2 domain 203 309 IPR000008 -
Vimu5g02204 774 Pfam C2 domain 43 145 IPR000008 -
Vimu5g02204 774 Pfam C2 domain 363 474 IPR000008 -
Vimu5g02204 774 ProSiteProfiles C2 domain profile. 25 145 IPR000008 -
Vimu5g02204 774 SMART C2_3c 43 139 IPR000008 -
Vimu5g02204 774 SMART C2_3c 364 471 IPR000008 -
Vimu5g02204 774 SMART C2_3c 204 302 IPR000008 -
Vimu5g02204 774 PANTHER PHOSPHORIBOSYLANTHRANILATE TRANSFERASE ISOFORM 1 9 774 IPR047259 -
Vimu5g02204 774 Pfam Plant phosphoribosyltransferase C-terminal 619 774 IPR013583 -
Vimu5g02204 774 ProSiteProfiles C2 domain profile. 183 307 IPR000008 -
Vimu5g02204 774 Gene3D C2 domain 42 164 IPR035892 -
Vimu5g02204 774 ProSiteProfiles C2 domain profile. 346 472 IPR000008 -
Vimu5g02204 774 Gene3D C2 domain 361 498 IPR035892 -
Vimu5g02204 774 CDD C2C_MCTP_PRT_plant 204 352 IPR047258 -
Vimu5g02204 774 CDD C2B_MCTP_PRT_plant 43 167 IPR047257 -
Vimu5g02204 774 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 363 500 IPR035892 -
Vimu5g02204 774 FunFam C2 domain-containing protein 190 333 - -
Vimu5g02204 774 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 43 181 IPR035892 -
Vimu5g02204 774 FunFam C2 domain-containing protein 38 182 - -
Vimu5g02204 774 CDD C2D_MCTP_PRT_plant 364 491 IPR047255 -
Vimu5g02204 774 Gene3D C2 domain 188 333 IPR035892 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g02204 Vimu-Chr5 33324406 33328039 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g02204 1 774 Lipid Metabolism Gene Families AT3G57880 80.670 0.0 1340
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g02204 - - gmx:100788273 1459.51
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu4g00436 4 3179075 3181399 Vimu5g02204 5 33324406 33328039 PCT