Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g00436 ATGCATAAGCCAGAAGGGCCAGCAGATTTTGCTCTCAAGGAGACCTCGCCAAACATAGGAGCAGGTGCAGTCATGAGAGACAAGCTCTCCTGCACCTATGACCTGGTTGAACAAATGCAATACCTTTATGTTCGAGTGGTGAAAGCCAAGGAATTACCAGGGAAGGATGTTACTGGTGGTGTGGATCCTTATGTTGAAGTGAAGCTTGGAAACTACAAGGGCCTCACCAAGCACTTTGAGAAAAAGTCCAATCCTCAGTGGAATCATGTTTTTGCCTTCTCCAAAGAAAGGATTCAAGCTTCTCTTCTGGAGGTGGTAGTGAAAGACAAAGATGTTGCTGTGGATGACTTTGTAGGGAGAGTGATGTTTGATCTGAATGAAATCCCAAAACGTGTGCCACCAGATAGCCCTTTGGCTCCACAGTGGTACAGACTAGAGGACAGGAGAGGTGAGAAAGCCAAGGGAGAGTTGATGTTGGCAGTTTGGATGGGAACTCAAGCAGATGAGGCATTTCCTGATGCATGGCATTCTGATGCAGCAACTGTTGGTCCTGAGGCTGTTGCAAACATAAGATCAAAGGTTTACCTTTCACCTAAGCTTTGGTATGTCAGGGTCAATGTTATTGAGGCTCAGGACTTGATACCAAGTGACAAAACCCGGTATCCTGAAGTTTATGTGAAGGCCAATCTGGGAAATCAGTTTTCAAGAACTAGAGCATCTCAGAGTAAAACCATAAATCCCATCTGGAATGAGGACTTGATGTTTGTTGCTGCTGAGCCATTTGAGGAGCCTTTGGTTCTGACTGCAGAAGACAGGGTTGGTCCAAACAAGGATGAAATCCTGGGAAGGTGTGTCATTCCTTTACACAATGTGCAGAGGAGGTTTGACCATAAGCCTGTGAACACAAGGTGGTTTAACCTTGAAAAACATGTGGTTGTTGAAGGGGAAAAGAAGAAAGAGACCAAGTTCTCAAGTAGGATACACTTGAGGGTTTGCTTGGAAGGTGGCTACCATGTGCTCGATGAATCAACTCACTACAGTAGTGATCTTAGGCCAACAGCAAAGCAGCTATGGAAGGCCAGCATTGGAATTCTAGAACTGGGGATTATAAGTGCACAAGGGCTTATGCCAATGAAGACTAGAGATGGTAGAGGAACCACAGATGCATATTGTGTAGCTAAATATGGGCAGAAGTGGATCCGTACTAGGACAATTGTGGATAGTCTTGCTCCAAGGTGGAATGAGCAATACATTTGGGAGGTTTTTGATCCATGTACTGTTATCACAGTAGGGGTCCATGATAATGGTCATTTACATGTTGGAGAGAAATCAGGTGCATCAAAGGATTCAAGAATAGGAAAGGTGAGAATTAGGCTGTCCACTCTTGAAGCTGACAGGGTGTACACACACTCTTATCCTCTTTTAGTACTGCATAATTCTGGTGTGAAGAAAATGGGAGAGGTGCAGTTGGCTGTAAGGTTCACAAGCTTATCTGTGATAAACATGTTGTCTATGTATACACAGCCATTGTTGCCAAAGATGCACTACATCCATCCTCTGTCTGTGGTTCAACTAGACAGTCTTAGGCATCAGGCTATCCAGATTGTGTCAATGAGGTTGAGCAGGGCAGAGCCACCACTGAGGAAGGAGGTGGTTGAATACATGTTAGATGTGGATTCACACATGTGGAGTATGAGAAGGAGCAAAGCCAATTTCTTCAGAATAACCATAGTTCTAGGTGGGTTGATAGCCTTTGGAAGGTGGTTTGATCAGATATGCAATTGGAAGAACCCCCTCACAACCATACTCATTCATATCCTTTTCATAATACTGGTTCTCTATCCAGAACTAATACTTCCAACAACTTTCCTCTACCTTTCTCTGATTGGAATTTGGAACTTCAGATGGAGGCCAAGACATCCTCCTCATATGGACACTAGACTATCTCATGCTGATGCAGCCCACCCTGATGAACTGGATGAAGAGTTTGATACATTCCCTACTTCTCGATCATCAGATATGATCAGAATGAGGTATGATCGTTTGAGAAGCATTGCTGGGAAGGTTCAAACTGTTGTAGGAGACTTGGCAACTCAAGGAGAAAGGTTCCATAATCTACTAAGCTGGAGAGACACAAGGGCCACCACTCTCTTTGTGACATTCTGTTTCATTGCTGCACTGGTTCTCTATGTTACTCCTTTCCAAGTTGTCTTCCTTCTCATTGGTTTCTATGTTCTAAGGCACCCCAGATTCCGCCAGAAACATCCTTCAGCTCCATTCAACTACTTCAAGAGATTGCCTGCTAGAGTGGACACCATATTGTAA 2325 0.4417 MHKPEGPADFALKETSPNIGAGAVMRDKLSCTYDLVEQMQYLYVRVVKAKELPGKDVTGGVDPYVEVKLGNYKGLTKHFEKKSNPQWNHVFAFSKERIQASLLEVVVKDKDVAVDDFVGRVMFDLNEIPKRVPPDSPLAPQWYRLEDRRGEKAKGELMLAVWMGTQADEAFPDAWHSDAATVGPEAVANIRSKVYLSPKLWYVRVNVIEAQDLIPSDKTRYPEVYVKANLGNQFSRTRASQSKTINPIWNEDLMFVAAEPFEEPLVLTAEDRVGPNKDEILGRCVIPLHNVQRRFDHKPVNTRWFNLEKHVVVEGEKKKETKFSSRIHLRVCLEGGYHVLDESTHYSSDLRPTAKQLWKASIGILELGIISAQGLMPMKTRDGRGTTDAYCVAKYGQKWIRTRTIVDSLAPRWNEQYIWEVFDPCTVITVGVHDNGHLHVGEKSGASKDSRIGKVRIRLSTLEADRVYTHSYPLLVLHNSGVKKMGEVQLAVRFTSLSVINMLSMYTQPLLPKMHYIHPLSVVQLDSLRHQAIQIVSMRLSRAEPPLRKEVVEYMLDVDSHMWSMRRSKANFFRITIVLGGLIAFGRWFDQICNWKNPLTTILIHILFIILVLYPELILPTTFLYLSLIGIWNFRWRPRHPPHMDTRLSHADAAHPDELDEEFDTFPTSRSSDMIRMRYDRLRSIAGKVQTVVGDLATQGERFHNLLSWRDTRATTLFVTFCFIAALVLYVTPFQVVFLLIGFYVLRHPRFRQKHPSAPFNYFKRLPARVDTIL 774
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g00436 774 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 201 354 IPR035892 -
Vimu4g00436 774 ProSiteProfiles C2 domain profile. 181 305 IPR000008 -
Vimu4g00436 774 CDD C2B_MCTP_PRT_plant 41 165 IPR047257 -
Vimu4g00436 774 ProSiteProfiles C2 domain profile. 346 472 IPR000008 -
Vimu4g00436 774 FunFam C2 domain-containing protein 36 180 - -
Vimu4g00436 774 Gene3D C2 domain 361 498 IPR035892 -
Vimu4g00436 774 CDD C2C_MCTP_PRT_plant 202 352 IPR047258 -
Vimu4g00436 774 SMART C2_3c 364 471 IPR000008 -
Vimu4g00436 774 SMART C2_3c 41 137 IPR000008 -
Vimu4g00436 774 SMART C2_3c 202 300 IPR000008 -
Vimu4g00436 774 FunFam C2 domain-containing protein 188 333 - -
Vimu4g00436 774 Gene3D C2 domain 187 333 IPR035892 -
Vimu4g00436 774 PANTHER PHOSPHORIBOSYLANTHRANILATE TRANSFERASE ISOFORM 1 9 774 IPR047259 -
Vimu4g00436 774 ProSiteProfiles C2 domain profile. 23 143 IPR000008 -
Vimu4g00436 774 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 41 178 IPR035892 -
Vimu4g00436 774 FunFam C2 domain-containing protein 346 498 - -
Vimu4g00436 774 Pfam C2 domain 41 134 IPR000008 -
Vimu4g00436 774 Pfam C2 domain 363 474 IPR000008 -
Vimu4g00436 774 Pfam C2 domain 201 307 IPR000008 -
Vimu4g00436 774 Gene3D C2 domain 31 164 IPR035892 -
Vimu4g00436 774 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 363 496 IPR035892 -
Vimu4g00436 774 CDD C2D_MCTP_PRT_plant 364 491 IPR047255 -
Vimu4g00436 774 Pfam Plant phosphoribosyltransferase C-terminal 619 774 IPR013583 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g00436 Vimu-Chr4 3179075 3181399 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu4g00436 1 774 Lipid Metabolism Gene Families AT3G57880 80.774 0.0 1333
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g00436 - - gmx:100809753 1481.46
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu4g00436 4 3179075 3181399 Vimu4g00436 4 3179075 3181399 ECH
Vimu4g00436 4 3179075 3181399 Vimu5g02204 5 33324406 33328039 PCT