Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g02120 ATGGCTCAACTCGAACGCCCCCAGAGACAGCTTGAAACTACTGCAAAAGCTCCCCCTGCCATCCACACCATGGAACAACTCCTCCGAGGTGAGTCCTCAAAGTCTAGTAAGAATTCACCAACCTGCTCCTCTTCCCCTTCCTCCAACTTGTCTTCCCCCAGCTCCCCTTTCTTCCAAAGGTTGAGATCTTCTCATGACTCAGAAGACGATCATTCCCAGAATCCCAAAAAATCAGTTCTCACCAAAGTCAAGGAGAAGGCCAAGAAACTGCGCAACAGCCTCAGCAAGAAAAAACATGAAGATGGGAACCTTAGTAGTCCATCATCTGCTACTGCCGCGGAAGGTGATGGAGCAGAAGAAGATGCTGAATTTCTCGGAGCTCCTATGTACGAATCAGAGAAGACACCTACTGGGTACAAAGCAAATGTAAAGCAGATTCCAAGTCCAAGAGCAAATCCTATGATCCCTGAGAAGCATGTTGTATCAAGCAGTGACAAACACGTAGTCGATCAAGATCATGAAAGGTCACTGTACCGATCCTTATCCAAGAGAACAACACACCCTGCAACAACAATAACAGCCACCACCCCAAATGCTACCACTGCTTCTGTTACTAATGTTAACGTTAATACTCATCCTAGTACTGCTTCTCCTCTAAACAAGACAACCACCGAAAGGGCAGCACCTAAACTGTCAACACTTCAGACTGAAAAACCAGATGCTGCACATGCAACCTCCAAAGTTCAAGGTCTCACTGTGTCCAAACCCTCAGAGCTTCATGATCATCCTTCACCATCATCACCATCATCACCATCATCATCATCACCAGCAGCATTTGCACCAAAAACAAGTCGCAGCAATTTGTCCTATTCTGCTCCTCGTACTCCCCTTGCAAGAGTAGCAACTTCCCAGTTTCCTACAACCACTCCGCGAACTACATCAGCTCCAATAACTTCAGCACCATCAGCTGCTACTTCACTGAGTGGGAAGAACACAAGCCCCACCGCGCAAATATGGGATAAGGGTGTGTCCATGAAAGAGTACTTCTTGAACAAACTGGAGCCGGGGGAAGATGAGAAGGCGCTGTCTCAGGTGATATCTGAAGCAATGAGTCCTCGCAGAACTCCTGGTGATGCAGGCGTGATGGAGAAGGTGAGAGAAGCTGTCACTTCTTTGCTCCGAACTGAGGAACCTGCAAAATACGCAGACGCAACTAATGTTGCTGCTCCGAGTACTACTCGCTTGTCACCTCAGAGCCCAGTATCTATCAAAGCTTCCCGCGCTCCATCTCAAATTCCATCATACTCCAATGCTTCTCGTGCTTCGTCTCAAATGCCAGCATCTACTAGTGTTTCTCGCACTTCATCGCAAGTCCCTGTATCTTACAACGCTCGGCAAGACTATACAGAGGCCCAGGAAGAAAACCATGGCCGAATTCTTCAGGCAAATTGA 1452 0.4773 MAQLERPQRQLETTAKAPPAIHTMEQLLRGESSKSSKNSPTCSSSPSSNLSSPSSPFFQRLRSSHDSEDDHSQNPKKSVLTKVKEKAKKLRNSLSKKKHEDGNLSSPSSATAAEGDGAEEDAEFLGAPMYESEKTPTGYKANVKQIPSPRANPMIPEKHVVSSSDKHVVDQDHERSLYRSLSKRTTHPATTITATTPNATTASVTNVNVNTHPSTASPLNKTTTERAAPKLSTLQTEKPDAAHATSKVQGLTVSKPSELHDHPSPSSPSSPSSSSPAAFAPKTSRSNLSYSAPRTPLARVATSQFPTTTPRTTSAPITSAPSAATSLSGKNTSPTAQIWDKGVSMKEYFLNKLEPGEDEKALSQVISEAMSPRRTPGDAGVMEKVREAVTSLLRTEEPAKYADATNVAAPSTTRLSPQSPVSIKASRAPSQIPSYSNASRASSQMPASTSVSRTSSQVPVSYNARQDYTEAQEENHGRILQAN 483
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g02120 483 MobiDBLite consensus disorder prediction 1 335 - -
Vimu5g02120 483 MobiDBLite consensus disorder prediction 403 483 - -
Vimu5g02120 483 MobiDBLite consensus disorder prediction 160 181 - -
Vimu5g02120 483 MobiDBLite consensus disorder prediction 28 61 - -
Vimu5g02120 483 Coils Coil 80 100 - -
Vimu5g02120 483 MobiDBLite consensus disorder prediction 182 231 - -
Vimu5g02120 483 MobiDBLite consensus disorder prediction 406 468 - -
Vimu5g02120 483 PANTHER LOW-TEMPERATURE-INDUCED 65 KDA PROTEIN-RELATED 34 482 IPR037491 GO:0009737
Vimu5g02120 483 MobiDBLite consensus disorder prediction 238 335 - -
Vimu5g02120 483 MobiDBLite consensus disorder prediction 62 103 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g02120 Vimu-Chr5 32799942 32801793 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g02120 - - var:108319604 735.717
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu4g00482 4 3496418 3498464 Vimu5g02120 5 32799942 32801793 PCT