Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g02111 ATGGTCTCAACTGTTCCTTCATCACCACAACTTTTTGTGGCATTCCTCTTTGTCACAACCTTCCTCTCTTCCTTTCCTGAATTTATTCTCGCCACTAGTTCAAAGCATGGAAGCGTTACAAGGCACTACAAGTTTGATATAAGGTTGAGAAATGTTACGAGGCTGTGCCACACAAAGAGCATGGTTACAGTGAACGGGAAGTTCCCTGGTCCTAGAATTGCTGCAAGAGAAGGTGACAGAATTGTGGTTAAGGTGGTCAATCATGTTCCCAACAATGTCACCATACACTGGCATGGAATTAGACAGCTTCGAAGTGGATGGGCAGATGGTCCATCTTACATAACTCAATGTCCCATTCAAACTGGTCAGAGTTATGTGTACAACTTCACCATCGTAGGACAAAGAGGAACTCTTTTCTGGCATGCTCACATTTCATGGTTGAGAGCCACTCTCTATGGACCTCTTATCCTCCTCCCTAGGCTCAACGAATCTTACCCTTTTGAAAAACCCCACAAGGAAGTTCCCATCCTCTTTGGTGAGTGGTGGAACGCTGACCCAGAGGCTGTTATTGCACAAGCCCTTCAGACAGGGGGTGGCCCAAATGTTTCAGATGCCTACACCTTTAATGGATTTCCTGGACCCCTCTACAATTGCTCCAATAACGAGACAGAGATTGAGACGTTCAGGTTAAAGGTGAAACCAGGGAAGACATACCTTCTTCGTTTGATCAATGCTGCACTCAATGACGAGCTCTTTTTCAGCATTGCAAATCACACCCTGGTCACTGTTGAAGCTGATGCTACTTACGTTAAACCTTTTGAGTCCGAGATAATAGTCCTAGGACCGGGACAAACATCAAACGTTCTGTTGAAGACAAAACCTGAGTACCCAAATGCCACTTTCTTCATGCTAGCAAGGCCATATTTCACTGGCACGGGCACTTTCGACAATTCCACAGTTGCTGGCATTCTAGAGTACAAGAAACCACTTGCTCCCAAAAACATTCCCACTTTAAAACCCTCTCTTCCAGCCATCAATGACACTTCTTTCGTTGCCAACTTCTCAAGCAAATTTCGTAGTTTGAACACTGCCAAGTACCCTGCCCAGGTACCTCAAAAAGTTGACAAGAGCTTTTTCTTCACGGTTGGACTTGGAACAAGTCCCTGCCCCAAAAACCAGACATGCCAAGGACCAAACAACAGTTCAAAATTTGCAGCCTCGATGAACAACATATCTTTCACTCTTCCTTCTATAGCACTTCTTCAGCAACATTTCTTTGGGCAGGCTAATAACGGCATTTACACCACTGATTTTCCTGCTGTGCCATTGAGACCTTTCAACTACACGGGGACCCCACCGAACAACACAAGGGTCACCAATGGAACCAAGACTGTGGTCATACCCTTTAACACAAGCGTGCAAGTGGTGCTTCAGGATACTAGCATTTTAGGAGCTGAGAGCCACCCTTTGCACCTTCATGGCTTTAATTTCTATGTTGTTGGTCAAGGCTTTGGGAACTTTAATCCCAACACTGACCCTCCAAAATTCAATCTGGTTGACCCAGTTGAAAGGAACACTGTTGGGGTGCCCTCTGGTGGTTGGGTTGCAATACGGTTCCTTGCTGATAACCCAGGTGTGTGGCTGATGCACTGTCACTTTGATGTGCACTTTAGTTGGGGACTGAGGATGGCCTGGATTGTTGAGGATGGGAAGCTCCCTAATCAGAAGTTGCCTCCTCCACCAGCTGATCTCCCCAAGTGTTGA 1764 0.4603 MVSTVPSSPQLFVAFLFVTTFLSSFPEFILATSSKHGSVTRHYKFDIRLRNVTRLCHTKSMVTVNGKFPGPRIAAREGDRIVVKVVNHVPNNVTIHWHGIRQLRSGWADGPSYITQCPIQTGQSYVYNFTIVGQRGTLFWHAHISWLRATLYGPLILLPRLNESYPFEKPHKEVPILFGEWWNADPEAVIAQALQTGGGPNVSDAYTFNGFPGPLYNCSNNETEIETFRLKVKPGKTYLLRLINAALNDELFFSIANHTLVTVEADATYVKPFESEIIVLGPGQTSNVLLKTKPEYPNATFFMLARPYFTGTGTFDNSTVAGILEYKKPLAPKNIPTLKPSLPAINDTSFVANFSSKFRSLNTAKYPAQVPQKVDKSFFFTVGLGTSPCPKNQTCQGPNNSSKFAASMNNISFTLPSIALLQQHFFGQANNGIYTTDFPAVPLRPFNYTGTPPNNTRVTNGTKTVVIPFNTSVQVVLQDTSILGAESHPLHLHGFNFYVVGQGFGNFNPNTDPPKFNLVDPVERNTVGVPSGGWVAIRFLADNPGVWLMHCHFDVHFSWGLRMAWIVEDGKLPNQKLPPPPADLPKC 587
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g02111 587 ProSitePatterns Multicopper oxidases signature 2. 550 561 IPR002355 GO:0005507
Vimu5g02111 587 Gene3D - 171 364 IPR008972 -
Vimu5g02111 587 Gene3D - 28 158 IPR008972 -
Vimu5g02111 587 NCBIfam laccase 40 587 IPR017761 GO:0046274|GO:0048046|GO:0052716
Vimu5g02111 587 CDD CuRO_3_LCC_plant 433 570 IPR034289 GO:0005507
Vimu5g02111 587 Gene3D - 391 587 IPR008972 -
Vimu5g02111 587 SUPERFAMILY Cupredoxins 38 186 IPR008972 -
Vimu5g02111 587 CDD CuRO_1_LCC_plant 43 159 IPR034288 GO:0005507
Vimu5g02111 587 Pfam Multicopper oxidase 50 159 IPR011707 GO:0005507
Vimu5g02111 587 Pfam Multicopper oxidase 173 328 IPR001117 -
Vimu5g02111 587 Pfam Multicopper oxidase 449 570 IPR011706 GO:0005507|GO:0016491
Vimu5g02111 587 ProSitePatterns Multicopper oxidases signature 1. 545 565 IPR033138 -
Vimu5g02111 587 SUPERFAMILY Cupredoxins 168 360 IPR008972 -
Vimu5g02111 587 CDD CuRO_2_LCC_plant 174 326 IPR034285 -
Vimu5g02111 587 FunFam Laccase 29 159 - -
Vimu5g02111 587 SUPERFAMILY Cupredoxins 367 587 IPR008972 -
Vimu5g02111 587 FunFam Laccase 171 364 - -
Vimu5g02111 587 PANTHER MULTI-COPPER OXIDASE 36 575 IPR045087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g02111 Vimu-Chr5 32734057 32737067 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g02111 K05909 - gmx:100811833 1130.55
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu4g00489 4 3542957 3545358 Vimu5g02111 5 32734057 32737067 PCT