Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g00489 ATGAGATGTGAACATTCAGAAAGTTGGATTCAGATCAGAAACACATTGCTGCAGAACAAAATGACAAACGTTATTCCTTCATCGGCGGCATTTTCTGTCGCAACTCTCTTTGTCTCAAGCATCTTGTGGACCATTCCAAATGATGTGCTGTCAGCTTCTTCAAACTATGGAGGCGTTACTAGGCACTATCAGTTCGATATAAGGCTGCAAAGCATTACAAGGTTGTGCCACACTAAGAACATGCTCACCGTAAATGGGAAGTTCCCGGGACCTCGTGTTATTGCTAGAGAAGGAGACAGATTAGTGGTTAAGGTGGTGAACCATGTTCCAAACAACATCACCATTCATTGTGGATGGTCGGATGGACCATCTTACATAACTCAATGTCCCGTACAAAGTGGTCAGAGTTATGTGTACAACTTCAGCTTGGTTGGGCAAAGAGGAACTCTCTTCTGGCATGCACACCACTCGTGGTTAAGGGCTACTCTCTATGGACCCCTCATCATCCTCCCAAGGACAAACGAATCTTACCCATTTGCCAAACCCTACAAGGAAATTCCCATCCTCTTTGGAGAGTGGTGGAATGTGGATCCGGAAGCAGTGATTGCACAAGCTCTTCACACAGGGGGTGGTCCAAATGCCTCTGATGCCTACACCATTAACGGACTTCCTGGACCACTCTACAATTGCTCCAGTAACGTGAATAATGAGCTATTTTTCAGCATAGCAAACCACACCATGACAGTCGTCGAAGCTGATGCTGCATATGTTAAACCCTTCAACTCCAAAATCATCGTCATTAGTCCAGGACAAACCACTAACGTCGCGTTGAAGACAAAACCTAAGTTCATAAATGCTACTTTCTTCATGCTAGCGAGACCTTTTTTCACCGCTAAGGGTACCTTTAACAGTTCCACGTTAGCTGGCATTCTAGAATACGAAATCGACACCCCTCCTTCGGAATCAGATTTGAAAAACCATACCCTTCTGAAACCAACCCTTCCTTCTATTAACGATACTTCCTTCGTTGCGAGTTTCAGTAGTAAATTTCGCAGTTTGAACAGTGCAAAGTACCCTGCGAATGTGCCTCGGAAAGTTGACAGGAGTTTCTTCTTCACGATAGGTCTCGGGAGCATTCCGTGTCCCAGAAACCAAACATGTGAAGGGCCTAATAAGAGGACAAAATTCGCTGCTTCCATGAACAACATATCTTTCAATCTACCTTCGGTGGCAATTCTTGAACAGCATTTCTCAGGGAAGGATAAGGGGGGTGTTTACACCACGGACTTCCCAGTTGTTCCTCCGAGACCCTTTAACTACACGGGGACACCACCGAATAACAGCATGGTGAAGAGTGGAACGAAGGTGGTGGTGATACCTTACAACACCAGAGTGCAGGTTGTGCTGCAGGACACTAGCATTTTGGGAGCAGAGAGTCATCCGTTACATCTTCATGGGTTTAACATGTTGGTGGTAGGTCAAGGTTTTGGGAACTATGATCCTGTTGAAGATCCTGGCAAGTTTAATCTGGTGGATCCTGTTGAGAGGAACACCATTGGTGTTCCTTCTGGTGGTTGGGTTGCAATTCGCTTTGTCGCTGACAACCCAGGTGTTTGGCTGATGCACTGCCACATTGATTTGCACCTGAGTTGGGGATTGAGGATGGCTTGGATTGTGAACAACGGCAAACTCTCTCATCAGAAGTTGCTTCCTCCACCTTCTGATCTCCCAAAATGTTGA 1740 0.4586 MRCEHSESWIQIRNTLLQNKMTNVIPSSAAFSVATLFVSSILWTIPNDVLSASSNYGGVTRHYQFDIRLQSITRLCHTKNMLTVNGKFPGPRVIAREGDRLVVKVVNHVPNNITIHCGWSDGPSYITQCPVQSGQSYVYNFSLVGQRGTLFWHAHHSWLRATLYGPLIILPRTNESYPFAKPYKEIPILFGEWWNVDPEAVIAQALHTGGGPNASDAYTINGLPGPLYNCSSNVNNELFFSIANHTMTVVEADAAYVKPFNSKIIVISPGQTTNVALKTKPKFINATFFMLARPFFTAKGTFNSSTLAGILEYEIDTPPSESDLKNHTLLKPTLPSINDTSFVASFSSKFRSLNSAKYPANVPRKVDRSFFFTIGLGSIPCPRNQTCEGPNKRTKFAASMNNISFNLPSVAILEQHFSGKDKGGVYTTDFPVVPPRPFNYTGTPPNNSMVKSGTKVVVIPYNTRVQVVLQDTSILGAESHPLHLHGFNMLVVGQGFGNYDPVEDPGKFNLVDPVERNTIGVPSGGWVAIRFVADNPGVWLMHCHIDLHLSWGLRMAWIVNNGKLSHQKLLPPPSDLPKC 579
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g00489 579 SUPERFAMILY Cupredoxins 359 579 IPR008972 -
Vimu4g00489 579 CDD CuRO_3_LCC_plant 425 562 IPR034289 GO:0005507
Vimu4g00489 579 ProSitePatterns Multicopper oxidases signature 2. 542 553 IPR002355 GO:0005507
Vimu4g00489 579 PANTHER MULTI-COPPER OXIDASE 55 566 IPR045087 -
Vimu4g00489 579 SUPERFAMILY Cupredoxins 179 353 IPR008972 -
Vimu4g00489 579 ProSitePatterns Multicopper oxidases signature 1. 537 557 IPR033138 -
Vimu4g00489 579 Gene3D - 44 171 IPR008972 -
Vimu4g00489 579 Pfam Multicopper oxidase 231 314 IPR001117 -
Vimu4g00489 579 Gene3D - 384 579 IPR008972 -
Vimu4g00489 579 Pfam Multicopper oxidase 433 562 IPR011706 GO:0005507|GO:0016491
Vimu4g00489 579 SUPERFAMILY Cupredoxins 57 198 IPR008972 -
Vimu4g00489 579 NCBIfam laccase 60 579 IPR017761 GO:0046274|GO:0048046|GO:0052716
Vimu4g00489 579 CDD CuRO_2_LCC_plant 186 313 IPR034285 -
Vimu4g00489 579 CDD CuRO_1_LCC_plant 63 171 IPR034288 GO:0005507
Vimu4g00489 579 Pfam Multicopper oxidase 70 172 IPR011707 GO:0005507
Vimu4g00489 579 Gene3D - 227 356 IPR008972 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g00489 Vimu-Chr4 3542957 3545358 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g00489 K05909 - gmx:100811833 881.708
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu4g00489 4 3542957 3545358 Vimu5g02111 5 32734057 32737067 PCT