Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g02083 TTGTTCATTCCGTGCCACCCCAAACGGAATAAGTTTAGATATGTCCAGGATCGTCGAACAAAACTAGCACCAGCAAAAATGAGCACACCCTTGTTCCATGAATTCAAAAAGCAAGCTTCTTTCTTCCTCAAGGAGAAAATCAAAACTGCTAGATTAGCTCTGACAGATGTCACCCCTGCGGAACTGATGACAGAAGAGGCAACTAGTGGAAATCCATGGGCTCCAGATTCCAGAACTCTCAGATCAATTTCAAGGGCTGCTTTTGAGTTAGATGATTATTGGAGGATTGTGGAGATTCTGCATAGAAGGTTCCTGAAATTCGAAAAGAAGAATTGGAGGGTCTCTTACAATTCCCTGATCGTGCTTGAGCACCTGTTGACTCAAGGACCAGAGAGTGTTGCTGAGGAATTTAAGAGTGACAAAAATGTCATCGGCCAGATGAAAAGTTTTCAGTATATTGATGACACTGGGTTTAATTGGGGCCTAACTGTCAGAAAGAAATCAGAGAGAATAGTGAATATGCTGGAAGAAGTAACTCTTCTAAAGGAAGAGAGAAAACAAGCTAGAAGGTTATCTAGAGGAATTGAAGGTTTTGGAAGTTTTCCCCATCGGTCAACTCCAGCACAAAGTATTCTTCGTGAGAAATCAATGCCAACCACACTCAAGAGATATGACTCAGACTTGAACAACCATGAAGATCAGGAAAACAAGTCCTCTTGTTCAAACAATGGTGTGGATGTGGACACAGTAGCTGTGAAATCTCCTGGCCATCAAGGTGGAACTTTCAAGTCCTTGGATGGTGTGGAAGACAAGGGATACCAGGATGATCTAGGCAACAGTCAAATACTTCAGAAATCTGAAACAGATGCTAAAGAAAACAAGGAGCCTAGCAAGGAAGAGTTCCATCTATGGAACATGAAAGGTGAGTCCAAACCCCTTTTGGATTGTGGTGAAGAGGATTCCAGGATTGGAATCATCAGAACAGAAGATGATCACCCCTTTAATTCAACTGAATTGCATGGCACTGCCTCACTGCTTTCTGCCAGAGACGGAATATTACAAGGGTGTTGA 1071 0.4248 MFIPCHPKRNKFRYVQDRRTKLAPAKMSTPLFHEFKKQASFFLKEKIKTARLALTDVTPAELMTEEATSGNPWAPDSRTLRSISRAAFELDDYWRIVEILHRRFLKFEKKNWRVSYNSLIVLEHLLTQGPESVAEEFKSDKNVIGQMKSFQYIDDTGFNWGLTVRKKSERIVNMLEEVTLLKEERKQARRLSRGIEGFGSFPHRSTPAQSILREKSMPTTLKRYDSDLNNHEDQENKSSCSNNGVDVDTVAVKSPGHQGGTFKSLDGVEDKGYQDDLGNSQILQKSETDAKENKEPSKEEFHLWNMKGESKPLLDCGEEDSRIGIIRTEDDHPFNSTELHGTASLLSARDGILQGC 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g02083 356 CDD ENTH 60 176 - -
Vimu5g02083 356 ProSiteProfiles ENTH domain profile. 52 185 IPR013809 -
Vimu5g02083 356 MobiDBLite consensus disorder prediction 218 234 - -
Vimu5g02083 356 SUPERFAMILY ENTH/VHS domain 38 185 IPR008942 -
Vimu5g02083 356 MobiDBLite consensus disorder prediction 213 299 - -
Vimu5g02083 356 SMART enth_2 58 185 IPR013809 -
Vimu5g02083 356 PANTHER EPSIN/ENT-RELATED 37 292 - -
Vimu5g02083 356 Coils Coil 164 191 - -
Vimu5g02083 356 Gene3D - 54 201 IPR008942 -
Vimu5g02083 356 Pfam ENTH domain 58 179 IPR013809 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g02083 Vimu-Chr5 32571837 32573258 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g02083 K12471 - gmx:100811093 567
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu4g00514 4 3728854 3730561 Vimu5g02083 5 32571837 32573258 PCT