Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g02079 ATGTTGGCTGCAATGCACGGGAAGATCGCCTGTGTGGAAAAGCTCCTCGAAGCTGGTGCTAATGTGTTAATGTTTGATGCGTGCTATGGAAGGACCTGCTTGCACTACGCAGCTTACTATGGCCATTCTTCTTGCCTTAAGGCAATTCTCTCTGCTGCTCAATCTAGTCCCGTGGCTGCTTCTTGGGGGTTTGCTCGGTTTGTGAATATTAGAGATGGAAGGGGTGCAACACCACTGCACTTGGCAGCCCGTCAAAGACGGCCTGAATGTGTACATATTCTATTGTACAGTGGAGCTCTTGTTTCTGCTTCAACAGGAAGATATGGCTGTCCTGGGAGCACTCCTCTTCATCTTGCAGCCAAAGGGGGGTCCTTGGATTGCATCAGGGAACTGTTGGCATGGGGTGCTGATCGCCTTCAACGTGATGCTTCTGGGCGTATACCTTATGTAGTTGCTCTTAAGCACAGACACAACGCATGTGCAGCACTGCTGAATCTTTCGTCAGCTGAGCCTCTTGTATGGCCATCATCTTTGAAGGTGATCAGTGAGCTTAATCCAGACGCCAAAGAGTTATTAGAGCAGGCCCTGATGAACGCAAACAGGGAAAGGGAGAAAAACATATTGAAAGAGAGTGATTACTCTCTTCCATCTCCAGCACACTCTGATGGGATAGATGACAACATTTCTGAGGTAATTAGACACCCTTTGAATTCACGCTAA 720 0.4806 MLAAMHGKIACVEKLLEAGANVLMFDACYGRTCLHYAAYYGHSSCLKAILSAAQSSPVAASWGFARFVNIRDGRGATPLHLAARQRRPECVHILLYSGALVSASTGRYGCPGSTPLHLAAKGGSLDCIRELLAWGADRLQRDASGRIPYVVALKHRHNACAALLNLSSAEPLVWPSSLKVISELNPDAKELLEQALMNANREREKNILKESDYSLPSPAHSDGIDDNISEVIRHPLNSR 239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g02079 239 MobiDBLite consensus disorder prediction 208 228 - -
Vimu5g02079 239 SMART ANK_2a 111 140 IPR002110 GO:0005515
Vimu5g02079 239 SMART ANK_2a 74 103 IPR002110 GO:0005515
Vimu5g02079 239 SMART ANK_2a 144 173 IPR002110 GO:0005515
Vimu5g02079 239 SMART ANK_2a 1 24 IPR002110 GO:0005515
Vimu5g02079 239 SMART ANK_2a 29 59 IPR002110 GO:0005515
Vimu5g02079 239 SUPERFAMILY Ankyrin repeat 1 164 IPR036770 -
Vimu5g02079 239 ProSiteProfiles Ankyrin repeat region circular profile. 111 137 - -
Vimu5g02079 239 ProSiteProfiles Ankyrin repeat profile. 74 106 IPR002110 GO:0005515
Vimu5g02079 239 PANTHER ANKYRIN REPEAT FAMILY PROTEIN 2 173 - -
Vimu5g02079 239 Pfam Ankyrin repeats (3 copies) 1 101 IPR002110 GO:0005515
Vimu5g02079 239 ProSiteProfiles Ankyrin repeat profile. 1 27 IPR002110 GO:0005515
Vimu5g02079 239 ProSiteProfiles Ankyrin repeat profile. 111 143 IPR002110 GO:0005515
Vimu5g02079 239 Pfam Ankyrin repeats (many copies) 111 149 IPR002110 GO:0005515
Vimu5g02079 239 Gene3D - 1 170 IPR036770 -
Vimu5g02079 239 ProSiteProfiles Ankyrin repeat region circular profile. 74 99 - -
Vimu5g02079 239 Coils Coil 189 209 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g02079 Vimu-Chr5 32541656 32543085 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g02079 2 132 Miscellaneous Gene Families AT5G60070 32.824 1.52e-10 58.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g02079 - - gmx:100800611 451.825
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu4g00519 4 3761836 3764361 Vimu5g02079 5 32541656 32543085 PCT