Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g00519 ATGGGTCAGACCCTTAGTTGCACACCCAACCATGACCACGGCCTCTTCACCGCCGTGCAACAGGGTGACCTCCAAATTGTCACCACACTCTTAGAGGCTGACCCCTCTCTCTTCCACCAAACCACTCTCTACGATCGCCACTCTCCGCTTCATATTGCCGCAGCCAATGCCCAGATCGAGATTCTCTCTAGGCTTTTGGATGGATCTCTCAACCCAGATGTTTTGAATCGCCACAAACAGACTCCGCTTATGTTGGCAGCAATGCACGGGAACATCGCCTGTGTCGAGAAGCTTCTTCGAGCCGGAGCTAATGTGTTAATGTTTGATACCATTTCCGGGAGAACCTGCTTACACTATGCCGCATACTACGGTCATTCTTCTTGCCTTAAGGCTATTCTTTCCGCTGCTCAATCTAGTCCAGTGGCTGCTTCTTGGGGATTTGCACGGTTTGTGAATATTAGAGATGGAAAAGGTGCAACGCCATTGCACTTGGCGGCTCGTCAGAGACGGTCTGAATGTGTACATATTCTGTTGGACAGTGGAGCTCTTGTTTGTGCTTCAACCGGTGGATATGGCTGTCCCGGGAGTACTCCGCTTCATCTAGCAGCTAGAGGGGGATCTCTTGATTGCATTCGTGAATTGTTGGCATGGGGTGCAGATCGTCTTCATCGGGATGCATCTGGACGGATACCATATATGGTTGCTCTGAAACACAAACATGGAGCCTGTGCATCATTGCTGAATCCTACATCTGCAGAACCTCTTGTCTGGCCGTCTCCATTGAAGTTCATCAGTGAGCTTAACCCTGAAGCTAAAACTTTATTGGAACAAGCCTTGATGGATGCAAACAGAGAAAGGGAGAAAAACATATTGAAAGGTAGCGCTTACTCTCTTCCATCTCCATCACATTCTGATGGAGTAACTGATGATGTGTCTGAGGTAATTTCTCACCCTATCTGCATATCCAATACCAACTTTGATATTTTGCAGGTTAGTGAGTCGGAATTATGTTGCATCTGTTTTGAGCAGGCATGCACAATCGAAGTTCAGAGCTGTGGCCACCAGATGTGTGCACAATGCACACTAGCCCTGTGTTGCCACAACAAGCCCAACCCTGCCACAGCCTGTCTCACTCCACCAGTTTGTCCATTCTGTCGAAGCACCATAACAAGACTCGTGGTCGTGAAAACAGAATACCATGATGAAACTGATCTAGACAATGTCGACATGAACTGTTCCAAGTTGAGCAAGACATCAAAGAAATTCAGAAACGTGAATGACAGTGGCAGCAGCAGCTTCAAGGGGTTATCCAGTGTAAGTTCATTCGGGAAGTTGGGTGGCCGCAGCTCTGGAAGGATCGCCGCCGAGTGGGTCGATAAACAGTGA 1386 0.4834 MGQTLSCTPNHDHGLFTAVQQGDLQIVTTLLEADPSLFHQTTLYDRHSPLHIAAANAQIEILSRLLDGSLNPDVLNRHKQTPLMLAAMHGNIACVEKLLRAGANVLMFDTISGRTCLHYAAYYGHSSCLKAILSAAQSSPVAASWGFARFVNIRDGKGATPLHLAARQRRSECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSLDCIRELLAWGADRLHRDASGRIPYMVALKHKHGACASLLNPTSAEPLVWPSPLKFISELNPEAKTLLEQALMDANREREKNILKGSAYSLPSPSHSDGVTDDVSEVISHPICISNTNFDILQVSESELCCICFEQACTIEVQSCGHQMCAQCTLALCCHNKPNPATACLTPPVCPFCRSTITRLVVVKTEYHDETDLDNVDMNCSKLSKTSKKFRNVNDSGSSSFKGLSSVSSFGKLGGRSSGRIAAEWVDKQ 461
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g00519 461 SUPERFAMILY Ankyrin repeat 9 250 IPR036770 -
Vimu4g00519 461 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 321 405 IPR013083 -
Vimu4g00519 461 ProSiteProfiles Ankyrin repeat profile. 157 189 IPR002110 GO:0005515
Vimu4g00519 461 ProSiteProfiles Ankyrin repeat region circular profile. 157 182 - -
Vimu4g00519 461 Gene3D - 6 144 IPR036770 -
Vimu4g00519 461 Pfam Ankyrin repeat 195 225 IPR002110 GO:0005515
Vimu4g00519 461 Gene3D - 145 294 IPR036770 -
Vimu4g00519 461 ProSiteProfiles Ankyrin repeat region circular profile. 45 77 - -
Vimu4g00519 461 ProSiteProfiles Ankyrin repeat profile. 45 77 IPR002110 GO:0005515
Vimu4g00519 461 ProSiteProfiles Ankyrin repeat region circular profile. 78 105 - -
Vimu4g00519 461 ProSiteProfiles Ankyrin repeat profile. 194 226 IPR002110 GO:0005515
Vimu4g00519 461 Pfam Ankyrin repeats (3 copies) 15 108 IPR002110 GO:0005515
Vimu4g00519 461 Pfam Ankyrin repeats (3 copies) 112 183 IPR002110 GO:0005515
Vimu4g00519 461 ProSiteProfiles Ankyrin repeat region circular profile. 194 220 - -
Vimu4g00519 461 ProSiteProfiles Ankyrin repeat profile. 78 110 IPR002110 GO:0005515
Vimu4g00519 461 SMART ANK_2a 112 142 IPR002110 GO:0005515
Vimu4g00519 461 SMART ANK_2a 78 107 IPR002110 GO:0005515
Vimu4g00519 461 SMART ANK_2a 227 256 IPR002110 GO:0005515
Vimu4g00519 461 SMART ANK_2a 45 74 IPR002110 GO:0005515
Vimu4g00519 461 SMART ANK_2a 194 223 IPR002110 GO:0005515
Vimu4g00519 461 SMART ANK_2a 157 186 IPR002110 GO:0005515
Vimu4g00519 461 SMART ANK_2a 10 39 IPR002110 GO:0005515
Vimu4g00519 461 ProSiteProfiles Zinc finger RING-type profile. 337 386 IPR001841 -
Vimu4g00519 461 PANTHER HOMEOBOX PROTEIN WARIAI 24 382 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g00519 Vimu-Chr4 3761836 3764361 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu4g00519 14 225 Miscellaneous Gene Families AT3G12360 31.944 2.12e-16 79.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g00519 - - gmx:100786708 833.558
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu4g00519 4 3761836 3764361 Vimu4g00519 4 3761836 3764361 ECH
Vimu4g00519 4 3761836 3764361 Vimu5g02079 5 32541656 32543085 PCT