Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g02070 ATGGCATCTCAGGCTAGCCTTCTCCTTCAAAAGCAGCTCAAAGATCTTTGCAAAAACCCCGTCGACGGCTTCTCCGCCGGTTTGGTCGACGAAAGCAACATTTTTGAATGGAGTGTCACCATAATTGGACCACCAGATACTCTATACGAGGGGGGCTTTTTCAATGCTATTATGAGTTTTCCATCCAATTACCCAAATAGTCCACCTTCAGTGAAGTTCACCTCAGAGATATGGCATCCCAATGTATATCCTGATGGCCGGGTTTGCATATCGATTCTTCATCCTCCTGGTGAGGATCCAAATGGATATGAGCTTGCAAGTGAACGATGGACACCTGTTCATACAATTCCAAAAGCTGGTGTGATGCAAAGCGATTGTGTTTTTCTGCTTGGGTTAAAGGCTGTTTAA 408 0.4485 MASQASLLLQKQLKDLCKNPVDGFSAGLVDESNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPSVKFTSEIWHPNVYPDGRVCISILHPPGEDPNGYELASERWTPVHTIPKAGVMQSDCVFLLGLKAV 135
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g02070 135 CDD UBCc 17 116 IPR000608 -
Vimu5g02070 135 ProSitePatterns Ubiquitin-conjugating (UBC) active site signature. 78 93 IPR023313 -
Vimu5g02070 135 Gene3D Ubiquitin Conjugating Enzyme 2 129 IPR016135 -
Vimu5g02070 135 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 3 117 - -
Vimu5g02070 135 SUPERFAMILY UBC-like 3 117 IPR016135 -
Vimu5g02070 135 SMART ubc_7 7 135 - -
Vimu5g02070 135 Pfam Ubiquitin-conjugating enzyme 9 118 IPR000608 -
Vimu5g02070 135 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 4 135 IPR000608 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g02070 Vimu-Chr5 32461962 32463276 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g02070 11 95 Miscellaneous Gene Families AT3G17000 36.559 1.62e-11 58.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g02070 K10575 - zju:125420854 225.328
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu4g00523 4 3814431 3818188 Vimu5g02070 5 32461962 32463276 PCT