Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g00523 TTGATGGCGTCCCAAGCAAGCCTCCTCCTTCAGAAGCAGCTCAAAGATCTCTGCAAGAACCCCGTTGATGGATTTTCCGCCGGTTTGGTCGACGAAACCAACATTTTTGAATGGAGCGTCACTGTAATTGGGCCTCCTGATACTCTCTATGATGATTTCTTTGCTTTTGCTTTCTGGGGTTTTGGGTTCCCCCTAAAGATGGCCTCTTTAATTGCTTATTTGGGCGGGAGTGAGGGGGGATTTTTTAATGCCATTATGAGCTTTCCACCCAACTACCCAAATAGTCCGCCATCAGTGAAATTTACCTCTGAGATATGGCATCCCAATGTTTATCCTGATGGGCGAGTTTGCATATCAATTCTTCACCCTCCTGGTGACGATCCGAATGGGTACGAGCTTGCAAGTGAGCGCTGGACACCTGTTCATACAGTAGAAAGTATAGTATTAAGTATCATATCGATGCTTTCTAGTCCTAATGATGAATCTCCTGCAAATGTTGAAGCCGCGAAAGAGTGGAGAGACAGGAGAGATGAATTCAAGAAAAAAGTTAGCCGTTGCGTGCGGAAGTCACAAGAAATGTTGTGA 585 0.453 MMASQASLLLQKQLKDLCKNPVDGFSAGLVDETNIFEWSVTVIGPPDTLYDDFFAFAFWGFGFPLKMASLIAYLGGSEGGFFNAIMSFPPNYPNSPPSVKFTSEIWHPNVYPDGRVCISILHPPGDDPNGYELASERWTPVHTVESIVLSIISMLSSPNDESPANVEAAKEWRDRRDEFKKKVSRCVRKSQEML 194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g00523 194 ProSitePatterns Ubiquitin-conjugating (UBC) active site signature. 106 121 IPR023313 -
Vimu4g00523 194 Gene3D Ubiquitin Conjugating Enzyme 2 194 IPR016135 -
Vimu4g00523 194 SMART ubc_7 8 192 - -
Vimu4g00523 194 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 4 191 - -
Vimu4g00523 194 FunFam ubiquitin-conjugating enzyme E2 R2-like 74 194 - -
Vimu4g00523 194 Pfam Ubiquitin-conjugating enzyme 10 52 IPR000608 -
Vimu4g00523 194 Pfam Ubiquitin-conjugating enzyme 78 186 IPR000608 -
Vimu4g00523 194 SUPERFAMILY UBC-like 7 190 IPR016135 -
Vimu4g00523 194 CDD UBCc 18 187 IPR000608 -
Vimu4g00523 194 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 5 192 IPR000608 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g00523 Vimu-Chr4 3814431 3818188 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu4g00523 12 159 Miscellaneous Gene Families AT3G17000 26.752 2.23e-07 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g00523 K10575 - gmx:100782328 301.982
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu4g00523 4 3814431 3818188 Vimu4g00523 4 3814431 3818188 ECH
Vimu4g00523 4 3814431 3818188 Vimu5g02070 5 32461962 32463276 PCT