Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g02059 ATGGCTGCTCCACCGGCAAGGGCTCGTGCCGATTATGATTATCTCATAAAGCTTCTCTTGATTGGTGACAGCGGTGTTGGAAAAAGTTGTCTCCTTCTGCGTTTTTCTGATGGTTCTTTCACTACTAGTTTCATCACAACTATAGGCATTGATTTTAAGATAAGAACCATTGAGCTTGATGGCAAACGGATCAAGCTCCAAATCTGGGACACTGCAGGGCAGGAGAGGTTTCGGACAATTACAACTGCTTACTATCGAGGTGCAATGGGCATATTGTTAGTCTACGATGTTACAGACGAAGCATCATTTAGCAGTAAAGTTCTCAATTGCTACTTAAATATCAGGAATTGGATTCGCAATATTGAGCAACATGCTTCAGACAATGTTAACAAAATACTGGTGGGGAACAAAGCTGATATGGATGAAAGCAAAAGGGTTGTGCCTACATCCAAGGGTCAAGAACTGGCCGATGAGTATGGAATCAAATTCTTTGAAACTAGTGCAAAAACAAATCTAAATGTTGAGGAAGTTTTCTTCTCAATAGCAAGAGATATAAAACAAAGGTTGGCTGACACGGACTCTAAAACAGAGCCATCAACAATCAAAATCAACCAAGACCAATCAGGAGGAGTTGGGGAAGCTGCCCAAAAATCGGCTTGCTGTGGTTGA 669 0.4155 MAAPPARARADYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDEASFSSKVLNCYLNIRNWIRNIEQHASDNVNKILVGNKADMDESKRVVPTSKGQELADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRLADTDSKTEPSTIKINQDQSGGVGEAAQKSACCG 222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g02059 222 SMART ran_sub_2 21 222 - -
Vimu5g02059 222 SMART ras_sub_4 17 188 - -
Vimu5g02059 222 ProSiteProfiles small GTPase Rab1 family profile. 11 221 - -
Vimu5g02059 222 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 11 192 IPR027417 -
Vimu5g02059 222 CDD Rab8_Rab10_Rab13_like 13 188 - -
Vimu5g02059 222 Pfam Ras family 17 186 IPR001806 GO:0003924|GO:0005525
Vimu5g02059 222 ProSiteProfiles small GTPase Rho family profile. 9 190 - -
Vimu5g02059 222 PRINTS Transforming protein P21 ras signature 57 79 - -
Vimu5g02059 222 PRINTS Transforming protein P21 ras signature 39 55 - -
Vimu5g02059 222 PRINTS Transforming protein P21 ras signature 16 37 - -
Vimu5g02059 222 PRINTS Transforming protein P21 ras signature 127 140 - -
Vimu5g02059 222 PRINTS Transforming protein P21 ras signature 163 185 - -
Vimu5g02059 222 Gene3D - 9 221 IPR027417 -
Vimu5g02059 222 SMART rab_sub_5 16 188 - -
Vimu5g02059 222 MobiDBLite consensus disorder prediction 190 222 - -
Vimu5g02059 222 MobiDBLite consensus disorder prediction 196 212 - -
Vimu5g02059 222 SMART rho_sub_3 18 188 IPR001806 GO:0003924|GO:0005525
Vimu5g02059 222 NCBIfam small GTP-binding protein domain 14 178 IPR005225 GO:0005525
Vimu5g02059 222 ProSiteProfiles small GTPase Ras family profile. 6 222 IPR001806 GO:0003924|GO:0005525
Vimu5g02059 222 PANTHER LD44762P 7 204 - -
Vimu5g02059 222 FunFam ras-related protein RABE1c-like 9 221 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g02059 Vimu-Chr5 32385863 32390416 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g02059 K07901 - gmx:100779203 389.423
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu4g00539 4 3890591 3895669 Vimu5g02059 5 32385863 32390416 PCT