Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g00539 ATGGCGGCTCCACCGGCAAGGGCTCGTGCGGATTACGACTATCTCATAAAGCTTCTCTTGATCGGCGATAGTGGTGTGGGAAAGAGTTGCCTTCTTCTACGATTCTCCGATGGTTCTTTCACAACTAGTTTCATCACAACCATAGGCATTGATTTTAAGATAAGAACCATTGAGCAGGATGGAAAACGGATCAAGCTCCAAATTTGGGATACTGCTGGTCAGGAGCGGTTCCGAACAATTACAACCGCTTACTATCGTGGTGCTATGGGCATATTGCTAGTGTATGACGTTACAGATGAATCTTCGTTTAACAGTAAGTTCCCTCCTGGTTTCTCATGGAATATGACCCAGCTTATACCAATTTCAGATATCAGGAATTGGATTCGTAACATTGAGCAGCATGCCTCAGACAATGTTAACAAGATACTTGTGGGGAACAAAGCCGACATGGATGAAAGCAAAAGGGCTGTGCCTACCTCCAAGGGACAAGCACTGGCCGATGAGTATGGAATCAAATTCTTTGAAACAAGTGCAAAGACAAATCTAAACGTGGAGGAAGTTTTCTTCTCGATTGCAAAAGATATAAAACAAAGGCTTGCTGACACTGACTCTAAGTCAGAGCCAGCAGGAATTAAAATCAACCAACAGGATCAGGCAACGGCTGGGGAAGTTGCACAAAAGTCAGCTTGCTGTGGTTGA 699 0.4435 MAAPPARARADYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIEQDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNSKFPPGFSWNMTQLIPISDIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIAKDIKQRLADTDSKSEPAGIKINQQDQATAGEVAQKSACCG 232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g00539 232 Gene3D - 9 231 IPR027417 -
Vimu4g00539 232 PANTHER LD44762P 7 231 - -
Vimu4g00539 232 SMART rho_sub_3 18 198 IPR001806 GO:0003924|GO:0005525
Vimu4g00539 232 CDD Rab8_Rab10_Rab13_like 13 198 - -
Vimu4g00539 232 SMART ras_sub_4 17 198 - -
Vimu4g00539 232 Pfam Ras family 121 196 IPR001806 GO:0003924|GO:0005525
Vimu4g00539 232 Pfam Ras family 17 104 IPR001806 GO:0003924|GO:0005525
Vimu4g00539 232 NCBIfam small GTP-binding protein domain 14 98 IPR005225 GO:0005525
Vimu4g00539 232 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 11 201 IPR027417 -
Vimu4g00539 232 ProSiteProfiles small GTPase Rho family profile. 9 200 - -
Vimu4g00539 232 SMART rab_sub_5 16 198 - -
Vimu4g00539 232 SMART ran_sub_2 21 230 - -
Vimu4g00539 232 ProSiteProfiles small GTPase Rab1 family profile. 11 231 - -
Vimu4g00539 232 ProSiteProfiles small GTPase Ras family profile. 6 232 IPR001806 GO:0003924|GO:0005525
Vimu4g00539 232 PRINTS Transforming protein P21 ras signature 137 150 - -
Vimu4g00539 232 PRINTS Transforming protein P21 ras signature 57 79 - -
Vimu4g00539 232 PRINTS Transforming protein P21 ras signature 16 37 - -
Vimu4g00539 232 PRINTS Transforming protein P21 ras signature 173 195 - -
Vimu4g00539 232 PRINTS Transforming protein P21 ras signature 39 55 - -
Vimu4g00539 232 FunFam ras-related protein RABE1c-like 9 231 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g00539 Vimu-Chr4 3890591 3895669 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g00539 K07901 - gmx:100800345 382.489
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu4g00539 4 3890591 3895669 Vimu4g00539 4 3890591 3895669 ECH
Vimu4g00539 4 3890591 3895669 Vimu5g02059 5 32385863 32390416 PCT