Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g02049 ATGCTTAAGGGTTATTATGATTATTGGTTGATTTTAAATGTGAACTTGTGGGAAACAGGAAGTGGAGTTGCAGGAATTGTTCTCCCTGAATCACAAGAGAAGGTTGTTGCAATCAAAAAGGGTGATGCTTTGGCACTCCCATTTGGTGTAGTGACATGGTGGTATAACAAGGAGGATACCGAGTTGCTAGTTCTGTTCCTGGGTGAAACATCAAAAGCCCACAAGACTGGTGAATTCACTGATTTTTTTCTGACTGGTGCCAATGGAATCTTCACTGGATTTTCAACTGAGTTTGTGGGGAGGGCTTGGGACTTGGAAGAAAAGGATGTGAAGGCCCTTGTTGGGAATCAATCAGGTAAGGGTATTGTGAAGGTTGAAGGAAATGTCAAGCTTCCTGAGCCTCAAGAGGAGCATAGGAAGGGCATGGCATTGAACTGTGAAGAGGCTCCATTGGATGTTGACATCAAGAATGGTGGAAGGGTTGTGGTGTTGAACACCAAGAACCTTCCCTTGGTTGGTGAGGTTGGTCTGGGAGCAGACCTTGTGAGGTTGGATGGAAACGCCATGTGTTCTCCAGGATTCTCTTGTGATTCTGCATATCAGGTTACATACATTGTGAGGGGAAGTGGCCGTGCTCAGGTTGTTGGTGTGGATGGTCGTAGGGTTTTGGAGACAACTGTGAAAGCTGGAAATTTGTTCATTGTGCCAAGGTTTTTTGTTGTTTCCAAGATTGCTGACTCTGATGGCCTCGAGTGGTTCTCTATCATCACTACCCCCAAGTGA 783 0.4547 MLKGYYDYWLILNVNLWETGSGVAGIVLPESQEKVVAIKKGDALALPFGVVTWWYNKEDTELLVLFLGETSKAHKTGEFTDFFLTGANGIFTGFSTEFVGRAWDLEEKDVKALVGNQSGKGIVKVEGNVKLPEPQEEHRKGMALNCEEAPLDVDIKNGGRVVVLNTKNLPLVGEVGLGADLVRLDGNAMCSPGFSCDSAYQVTYIVRGSGRAQVVGVDGRRVLETTVKAGNLFIVPRFFVVSKIADSDGLEWFSIITTPK 260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g02049 260 CDD cupin_11S_legumin_C 152 260 - -
Vimu5g02049 260 Gene3D Jelly Rolls 147 260 IPR014710 -
Vimu5g02049 260 Pfam Cupin 19 110 IPR006045 -
Vimu5g02049 260 Pfam Cupin 152 257 IPR006045 -
Vimu5g02049 260 Gene3D Jelly Rolls 5 137 IPR014710 -
Vimu5g02049 260 PRINTS 11-S seed storage protein family signature 230 245 IPR006044 GO:0045735
Vimu5g02049 260 PRINTS 11-S seed storage protein family signature 248 260 IPR006044 GO:0045735
Vimu5g02049 260 PRINTS 11-S seed storage protein family signature 165 185 IPR006044 GO:0045735
Vimu5g02049 260 PRINTS 11-S seed storage protein family signature 212 228 IPR006044 GO:0045735
Vimu5g02049 260 PANTHER OS03G0336100 PROTEIN-RELATED 5 257 - -
Vimu5g02049 260 SMART Cupin_1_3 5 111 IPR006045 -
Vimu5g02049 260 SMART Cupin_1_3 149 260 IPR006045 -
Vimu5g02049 260 SUPERFAMILY RmlC-like cupins 19 259 IPR011051 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g02049 Vimu-Chr5 32315653 32316753 Dispersed/Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g02049 - - gmx:100782055 459.144
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu4g00557 4 4019032 4021911 Vimu5g02049 5 32315653 32316753 PCT