Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g00557 TATCACGTACAAACTCCAAAATCTCTTTCTTTTCTCACTGTAATCTTCTGGTCCACTGAAAAAGCGAACAAGAAGAAGATGGAGATTGGTCTTTCTCCCAAGTTGGCGAAGAAAGTTTACGAAGGAGATGGTGGGTCATATCTCGCCTGGTCCCCCTCTGAGCTTCCCATGCTTCGCGAAGGTAACATTGGTGCTGCCAAACTCTCTCTGCACAAAAACGGTTTTGCCCTTCCTCGATATTCCGACTCTTCCAAAGTCGCCTATGTTCTTCAAGGGAGTGGAGTGACTGGAATAGTGCTGCCTGAATCAGAAGAGAAGGTTGTTGCAATCAAGAAGGGGGATGCGCTTGCACTCCCCTTTGGTGTTGTAACATGGTGGTATAACAAAGAAGAAACTGAGTTGATTGTTCTGTTTCTTGGGGACACTTCCAAGGCTCACAAGGCTGGTGAATTCACTGACTTTTTTCTGACTGGTTCCAATGGAATCTTCACGGGATTTTCCACTGAGTTTGTGGGCAGGGCTTGGGACTTGGAAGAGAGTGATGTCAAGACCCTTGTTGGAAAACAATCGGGCAAAGGGGTTGTGCAGTTGGAAGGAACCATCACACTACCCGAGCCTAAACCAGAGCACCGGATTGGCATGGCCCTGAACTGTGAAGAGGCTCCATTGGATGTTGACATCAAGGGTGGTGGAAGGGTTGTGGTGTTGAACACCAAGAATCTTCCCTTGGTTGGTGATGTTGGACTAGGGGCTGACCTTGTGAGGTTGGATGGAGGAGCCATGTGCTCTCCAGGATTCTCCTGTGATTCTGCTTTGCAGGTTACTTATATTGTCAGGGGTAGTGGCCGGGTTCAGGTTGTTGGAGTTGATGGTCAAAGGGTTTTGGAGACAACCATAAAAGCTGGTAATTTGTTCATTGTGCCAAGGTTTTTTGTGGTCTCAAAAATTGCTGATCCAGAGGGAATGGAGTGGTTCTCTATAATCACTACCCCTAATCCTATATTTACCCACTTGGCTGGAAGTTCTTCTGTGTGGAAGGCTTTATCACCTTCTGTTCTGCAAGCTGCTTTCAATGTAGATTCAGGAGTGGAGCAACTGTTCCGTTCAAAGAGGACTTCCGATGCTATTTTCTTCCCTCCACCAAATTAG 1149 0.4691 YHVQTPKSLSFLTVIFWSTEKANKKKMEIGLSPKLAKKVYEGDGGSYLAWSPSELPMLREGNIGAAKLSLHKNGFALPRYSDSSKVAYVLQGSGVTGIVLPESEEKVVAIKKGDALALPFGVVTWWYNKEETELIVLFLGDTSKAHKAGEFTDFFLTGSNGIFTGFSTEFVGRAWDLEESDVKTLVGKQSGKGVVQLEGTITLPEPKPEHRIGMALNCEEAPLDVDIKGGGRVVVLNTKNLPLVGDVGLGADLVRLDGGAMCSPGFSCDSALQVTYIVRGSGRVQVVGVDGQRVLETTIKAGNLFIVPRFFVVSKIADPEGMEWFSIITTPNPIFTHLAGSSSVWKALSPSVLQAAFNVDSGVEQLFRSKRTSDAIFFPPPN 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g00557 382 CDD cupin_11S_legumin_N 31 199 - -
Vimu4g00557 382 PANTHER OS03G0336100 PROTEIN-RELATED 15 381 - -
Vimu4g00557 382 Gene3D Jelly Rolls 221 382 IPR014710 -
Vimu4g00557 382 SUPERFAMILY RmlC-like cupins 38 371 IPR011051 -
Vimu4g00557 382 CDD cupin_11S_legumin_C 224 379 - -
Vimu4g00557 382 Gene3D Jelly Rolls 19 220 IPR014710 -
Vimu4g00557 382 PRINTS 11-S seed storage protein family signature 320 338 IPR006044 GO:0045735
Vimu4g00557 382 PRINTS 11-S seed storage protein family signature 237 257 IPR006044 GO:0045735
Vimu4g00557 382 PRINTS 11-S seed storage protein family signature 302 317 IPR006044 GO:0045735
Vimu4g00557 382 PRINTS 11-S seed storage protein family signature 284 300 IPR006044 GO:0045735
Vimu4g00557 382 PRINTS 11-S seed storage protein family signature 342 359 IPR006044 GO:0045735
Vimu4g00557 382 SMART Cupin_1_3 29 183 IPR006045 -
Vimu4g00557 382 SMART Cupin_1_3 221 365 IPR006045 -
Vimu4g00557 382 FunFam Glycinin G1 218 382 - -
Vimu4g00557 382 Pfam Cupin 225 361 IPR006045 -
Vimu4g00557 382 Pfam Cupin 36 182 IPR006045 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g00557 Vimu-Chr4 4019032 4021911 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu4g00557 61 373 Miscellaneous Gene Families AT2G18540 21.763 1.32e-08 54.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g00557 - - vra:106758740 730.324
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu4g00557 4 4019032 4021911 Vimu4g00557 4 4019032 4021911 ECH
Vimu4g00557 4 4019032 4021911 Vimu5g02049 5 32315653 32316753 PCT