Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g02034 ATGCTGGGCACCGAGTTCTGCGGGAAACTCATCAAACGCTCCGAAAACTTGGGTCCCAACGAGTACCGTTTTCTGTTGAAAGCCATCGTCAGCTCCGGCATCGGCGAACAGACTTACGCGCCAAGAAACATCTTCGAGGGTAGAGAGGCAACGCCCACATTGCACGACAGCATCGAAGAGATGGAAGAGTTCTTCAACGACGCCATCGCTAAGCTTCTCGCCAAATCCAAAGTCTCCCCCTCAGAGATCGACGTCCTCGTCGTCAACATCTCCATGCTGGCCGCTCTCCCCTCCCTCTCCGCGCGCATCATCAACCGCTACAAGCTCCGCCACGACGTCAAGGTCTACAACCTCACCGGCATGGGTTGCAGCGCCAGCCTGATCTCCATGGACATTGTGAAAAACATCTTCAAGACGCAGAGGAACAAGCTGGCGTTGTTGGGTGACACGGTGTTCATGATAAGCTTTGGAGCAGGCTTTAAATGCAACAGCTGTTTGTGGGAGGTGATGAAGGACCTGGGAGACCCAAATGTGTGGGACGATTGCATTGATGACTACCCACCAGAGACACTGGACAACCCCTTCATGAAGACATATGGTTGGATCAACGAGGTTGAAGACCCCTACACTTACGAAAATCTCCCTGATTTTCTCAAGTGA 660 0.5273 MLGTEFCGKLIKRSENLGPNEYRFLLKAIVSSGIGEQTYAPRNIFEGREATPTLHDSIEEMEEFFNDAIAKLLAKSKVSPSEIDVLVVNISMLAALPSLSARIINRYKLRHDVKVYNLTGMGCSASLISMDIVKNIFKTQRNKLALLGDTVFMISFGAGFKCNSCLWEVMKDLGDPNVWDDCIDDYPPETLDNPFMKTYGWINEVEDPYTYENLPDFLK 219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g02034 219 Gene3D - 4 151 IPR016039 GO:0016746
Vimu5g02034 219 Pfam FAE1/Type III polyketide synthase-like protein 4 147 IPR013601 GO:0006633|GO:0016020|GO:0016747
Vimu5g02034 219 PANTHER 3-KETOACYL-COA SYNTHASE 148 188 IPR012392 GO:0006633|GO:0016020|GO:0016747
Vimu5g02034 219 SUPERFAMILY Thiolase-like 13 157 IPR016039 GO:0016746
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g02034 Vimu-Chr5 32207778 32209052 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g02034 148 216 Acyl Lipid Metabolism Gene Families AT2G28630 58.904 4.68e-24 97.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g02034 K15397 - gmx:100810048 259.996
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu4g00562 4 4056101 4057522 Vimu5g02034 5 32207778 32209052 PCT