Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g00562 ATGGAGTTCATCATATTACTTTATGGTGCAACAATGCTGTACTTGTGTTTCCTGATCTGGAAATTGTTTGATCAGAGAAGAGACCAAGAGTGTTACATATTGGACTACCAACTGTACAAGCCAAGCGATGAAAGAAAGCTTGGAACCGAATGCTGTGGCAGGATCATAGAGAGGAACAAGCATTTGGGTCTGAATGAGTACAAGTTCCTCCTCAAAGCCGTTGTCAACTCCGGCATTGGTGAGGAAACGTATGCCCCAAGCAACGTTATCGAGGGTCGTGAGGCAGCTCCGACACTGAAAGATGGTGTCACGGAAATGGAGGAGTTTTTTCATGACAGCATTGCCAAGCTCCTTGCAAGTTCAGGCATTTCCCCCTCGCAGATCGATGTGCTTGTGGTGAATGTCTCTATGTTCTCCGTTGTTCCTTCCCTGACTTCAAGAATCATCAACCGCTACAAAATGAGGGAGGACGTAAAGGCTTACAACCTCACTGGGATGGGTTGCAGTGCCAGCCTTATTTCACTGGACATCATTAAGAACATTTTCAAGTCACATAAGAACAAGTTTGCTGTTTTGGTGACTTCCGAGTCTCTCAGTCCAAACTGGTATAACGGCAACGACAGATCAATGATTCTTGCCAACGGTTTGTTCCGGAGTGGTGGGTGTGTCATACTTTTGACAAACAAAAGATCCTTCAAGCACAGGGCCATGATGAGGCTGAAGTGTTTGGTGAGGACTCACCACGGGGCTAGAGAAGATGCTTACAGTTGCTGCAATCAGAAGGAAGACGAGGAAGGCAGGCTTGGGTTTTACCTTGGCAAAAACCTTCCCAAGGCAGCTACAAGAGCCTTTGTTGATAACCTAAGGGTTTTGTCACCCAAGGTTTTGCCAACTAGAGAGTTGCTAAGGTTTATGGTTGTGTTCCTCTTGAGAAAACTGAGGGAAAGTAGTTCCCTTAAGTCTTCAAGTGGGGGATCTAGTAAGTCTAATAACAAATCTCCTTTGAACTTCAAGACTGGGATTGAACATTTTTGCCTGCACACAGGAGGAAAAGCTGTGATTGATGGGATTGGAATGAGCTTAGATCTGTGTGAATATGACCTCGAACCAGCAAGAATGACACTGCATAGGTTCGGCAACACTTCTGCTAGTAGCCTGTGGTACGTGCTGGGGTACATGGAGGCCAAAAAGAGGCTCATGAAGGGTGACAGAGTACTGATGATAAGCTTTGGTGCTGGCTTTAAATGCAACAGTTGTTTGTGGGAGGTAATGAAGGATCTGAGGGATCATCCTAACGTGTGGGACGAATGCATTGATGACTACCCACCAGAGTCCTTGGCCAACCCTTTCATGGAGAAATTTGGTTGGATCAATGATCTTCAAGAAGCAAGCAACTTCAAACTCCATGATTTTATCAAGTAA 1422 0.4536 MEFIILLYGATMLYLCFLIWKLFDQRRDQECYILDYQLYKPSDERKLGTECCGRIIERNKHLGLNEYKFLLKAVVNSGIGEETYAPSNVIEGREAAPTLKDGVTEMEEFFHDSIAKLLASSGISPSQIDVLVVNVSMFSVVPSLTSRIINRYKMREDVKAYNLTGMGCSASLISLDIIKNIFKSHKNKFAVLVTSESLSPNWYNGNDRSMILANGLFRSGGCVILLTNKRSFKHRAMMRLKCLVRTHHGAREDAYSCCNQKEDEEGRLGFYLGKNLPKAATRAFVDNLRVLSPKVLPTRELLRFMVVFLLRKLRESSSLKSSSGGSSKSNNKSPLNFKTGIEHFCLHTGGKAVIDGIGMSLDLCEYDLEPARMTLHRFGNTSASSLWYVLGYMEAKKRLMKGDRVLMISFGAGFKCNSCLWEVMKDLRDHPNVWDECIDDYPPESLANPFMEKFGWINDLQEASNFKLHDFIK 473
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g00562 473 CDD CHS_like 12 421 - -
Vimu4g00562 473 PIRSF Very_long_ch_3-ktacl-CoA_syn 2 456 IPR012392 GO:0006633|GO:0016020|GO:0016747
Vimu4g00562 473 Pfam 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal 341 422 IPR013747 -
Vimu4g00562 473 Pfam FAE1/Type III polyketide synthase-like protein 25 313 IPR013601 GO:0006633|GO:0016020|GO:0016747
Vimu4g00562 473 SUPERFAMILY Thiolase-like 243 424 IPR016039 GO:0016746
Vimu4g00562 473 SUPERFAMILY Thiolase-like 17 232 IPR016039 GO:0016746
Vimu4g00562 473 PANTHER 3-KETOACYL-COA SYNTHASE 14 443 IPR012392 GO:0006633|GO:0016020|GO:0016747
Vimu4g00562 473 Gene3D - 58 423 IPR016039 GO:0016746
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g00562 Vimu-Chr4 4056101 4057522 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu4g00562 19 470 Acyl Lipid Metabolism Gene Families AT2G28630 68.271 0.0 655
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g00562 K15397 - gmx:100776947 803.127
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu4g00562 4 4056101 4057522 Vimu4g00562 4 4056101 4057522 ECH
Vimu4g00562 4 4056101 4057522 Vimu5g02034 5 32207778 32209052 PCT