Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g02003 ATGCTCTTCACAGCGCTCATTGCCACTTCCGACGACCCCGAGACGACTCTCAAGCTTTGTGCCACCGTCCCACATCGCCTCTTCCGCGACGCGGTCACGGCTGCTAACATTGCTTTCGCTAATAAGATGAGGTTATTTGTCACTGCAAATGACAGCAACGCGCAAGAGATAGAGATAGAAAGCCAAAAACCAAAAACGCCATCATCCAAACAGCCCCTTCTCTCTCTTTTAAAAGACACCCTGTGGTTTTTCTCTGCCCTCTTAACTTTTTGCCCTCTCTCTCTCCTCTTATCGATTTCACAGACAATCTCCTCCTCACAGTTTCGTCTTCTCGATCTCACTGTGAGTCATCGACTTCCAATTTCTAACCCTAATTTCTCGTATCCAATGCGATTTCTGCTTAGATCCCTAATTGCTTCTCAAATTACGGTTAATGTTCTCGCCGTCCGTGTTTTACCCCTTTTCTTGTCAAATATTCGAAGCTCTCGTATCATTGCATATTGGATTTCTTTTTTATGTCATGGTTTGTTATTTTTATTTGACATCAATGTTTGTTGTTTATGCCTGTTTTCCTCCAGGGCAATCATGAGTGACAAAGGAGAAAGAACATGTCCCCTCTGTGCTGAAGAAATGGATTTGACGGATCAGCAGTTGAAGCCTTGCAAATGTGGTTATGAGATCTGTGTCTGGTGCTGGCATCATATTATGGACATGGCTGAGAAGGATGACACCGAGGGGCGATGCCCAGCATGTCGTTCTCCTTATGATAAGGAAAAGATTGTTGGGATGGCTGCAAACTGTGAGAGATTGGTGAATGAAGTTACTATGGAGAAAAAGATGAAGACTCAGAAGGCGAAGTCAAAATCATCTGATGGGCGGAAGCAGCTCAGCAGTGTGCGAGTGATTCAGAGGAACCTTGTTTACATAGTTGGTTTGCCTCTCCATCTTGCAGACGAAGATCTTCTTCAGCGGAGAGAGTATTTTGGTCAGTATGGGAAGGTCTTAAAAGTATCAATGTCTCGAACAGCAGCTGGTGTCATCCAACAGTTTCCAAATGATACATGCAGTGTGGCTTGTTTTGGAACCACAAAATATTGTCATGCATGGCTTCGAAGTGTGTTGATGAGAGATCTCTATGACCAGCCTTGCAGCAATCCGGATTGTCTATATTTGCATGAGATTGGATCTCAAGAAGATAGCTTTACTAAAGATGAAATAATTTCAGCTTACACCAGAAGTCGAGTTCAGCAGATCACTGGTGCAACTAACAATATGCAACGGCGATCAGGGAATGTATTACCTCCTCCACTGGATGACAATATGAATACTACTCCTGCAAAGCCTATTGTGAAAAATCCTTTAAGTAACTCTGTTAGCACTGCCAGAGGTTCACCTCCGAATGGAATTTATGAGAGACATGTTCCCCTCCCTGCTAGCGCTGCATGGGGTACCCCGGCAACAAATTGTCAGCCCCCAGCTGGAGGTCTATCTTATCCAAATGGGCCATCCAAGCCCAAACCTGATACAGGCAGCAGCTCGCTAGCATTTTCTGCAGCTGTTACAGGCTCAATTCAGGCTTCTGATGTTACAAAGAGACCACCATCGAGTGATGGGAGTCATAGTATGACAACTAGAGTGAAAAGTGAATTGTTGAAACCTGTTAAACAATACAACAATAGTGTGGACAGTCTGGTTAGTTCAGGAGAAAAATCTTCATCCTCTGACGCTCCCCCTGTTCCAGTGAATTTGAACAGCCAGTTGTCTTCTCTACCATTGTCCCGAGATAGTGATGGCAATTGTACTACAGCAAACACAATAAATTCTACTAACTTGACTGGACAGTCTTGTAATTCTGGTCCCGAGGAAGCAATGCCTGCTACCAATGAAGAGATTCCGAAGTTGTCCATTGAGTTGTCCTCTATTAACATCGATGGAAATGCTGAACATTGCAGTATAACCGGACCTAATAGCCCTCCTACCGATTATGTCTTGATTAAATCTCCCCAAGTTCAAGGATCACAGTATAAAGACAGATTTAGGGATGTAATAACTACAAATGTGTCTGGTAAAGCTATGCCGGATAATGAGGTTTGTAATTCTATGGAACAGGGTGATTGGAAATTGGATTCTCAATCTCAAGTAGCATCAAATGCCATGGAATTCGATGATGATGTAACATCTTTTGACAATCAAAGACTCAAGGATCCAGAAGTTGTTTGTCGTTCTTATTTGCCCAAGTCAACTGGTTTCCTTCATGTATCAAACCTTTCCAGCCCTCGTCTTCTGCAGCATGGTGAAAGTTGTACTCCCATGAATGCAGGTTCTGTATCTGTTAATGAATCTATATTACATGCATCTAATATATTATCCAACGACCACTCTGATAAATTGGTCAGCAGCAGCTCCCATAGTCTGCTTAATGACGAAAGAAATGGTCATAGCATTCAAAGATTAGTTAGTGAAGCAGTAAATTCTGGACATGATGTTACTATGGATAAGGGTGAAAGTAGTATAATTTCAAATATTTTGTCCATGGATTTCGATGCCTGGGATGACTCACTAACATCACCACATAATTTAGCTAAGTTGTTGGGTGACAATACTGAGAACCAGTCTGGTCCTTTAAACAAATCTAGTTCTTGGAAAGTTCACAGTAACAATCAATCAAGGTTCTCTTTTGCGAGGCAGGAGGAATCCAAAATCCAAATGTTTGATGCGAATGCTTCTTATGGTGTAAATCATCAACGTCCAAATAATAAAGTTTTCCAGAATTTTTCAGAAAGAGACTTGTATATGGATAAGTTGGGCATTGCGAATGGATTTCGTACAAGTAACTTTGAGGAAGCTGAAAATATTGGTAGTGGTCATTTCATTTCATCTAATAAGCTTTCGGCCATCTCAAGAGCGCAAGTTTCAGCTCCACCGGGATTTTCCATTCCAAGCAGGCCACCACCACCTGGTTTTTCTTCTAATGAGAGAGTGGAGCAGGCTTTTGACTCCATTTCTGGGAATTCTATGCTTGATCATTCTTCCCTCTTGAGAAATTCATATCAGTCACCTTCAGCTGGAAACCTTGGTGGTGCTGGGGATATTGAATACATGGACCCTGCTATTTTGGCAGTTGGAAAAGGGAGACTTCAAGGTGCACTGAACAGCCCTGCACTGGACATTCGATCCAATTTTATGCCTCAACTAAATTACTTTGAAAATGATGCCAGACTGCAATTATTGATGCAAAGATCTCTGTCACCACAGCAAAACCATAGATTTTCTGAAATTGGGAATACTTTTTCTCAACTTGGTGATTCTTTTGCTGTTTCTTCAAGGTTAGATCAATCACAAGTCAGCAATCTGAGCCCATTCCAACAGCTGTCTATGCAGCAGTCTGCAAATGCAGTCTTGTCAAATGGGCAATGGGATGGGTGGAATGAGGTGCAGACTGGAAATGGTTTGGGTGTGGCCGAGCTTTTGAGAAATGAAAGACTTGGGTTTAATAAATTTTACTCAGGATATGATGATTCAAAATTTCGGATGCCAAATTCCGGGGATCTCTACAACAGAACATTTGGGATGTGA 3576 0.422 MLFTALIATSDDPETTLKLCATVPHRLFRDAVTAANIAFANKMRLFVTANDSNAQEIEIESQKPKTPSSKQPLLSLLKDTLWFFSALLTFCPLSLLLSISQTISSSQFRLLDLTVSHRLPISNPNFSYPMRFLLRSLIASQITVNVLAVRVLPLFLSNIRSSRIIAYWISFLCHGLLFLFDINVCCLCLFSSRAIMSDKGERTCPLCAEEMDLTDQQLKPCKCGYEICVWCWHHIMDMAEKDDTEGRCPACRSPYDKEKIVGMAANCERLVNEVTMEKKMKTQKAKSKSSDGRKQLSSVRVIQRNLVYIVGLPLHLADEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNDTCSVACFGTTKYCHAWLRSVLMRDLYDQPCSNPDCLYLHEIGSQEDSFTKDEIISAYTRSRVQQITGATNNMQRRSGNVLPPPLDDNMNTTPAKPIVKNPLSNSVSTARGSPPNGIYERHVPLPASAAWGTPATNCQPPAGGLSYPNGPSKPKPDTGSSSLAFSAAVTGSIQASDVTKRPPSSDGSHSMTTRVKSELLKPVKQYNNSVDSLVSSGEKSSSSDAPPVPVNLNSQLSSLPLSRDSDGNCTTANTINSTNLTGQSCNSGPEEAMPATNEEIPKLSIELSSINIDGNAEHCSITGPNSPPTDYVLIKSPQVQGSQYKDRFRDVITTNVSGKAMPDNEVCNSMEQGDWKLDSQSQVASNAMEFDDDVTSFDNQRLKDPEVVCRSYLPKSTGFLHVSNLSSPRLLQHGESCTPMNAGSVSVNESILHASNILSNDHSDKLVSSSSHSLLNDERNGHSIQRLVSEAVNSGHDVTMDKGESSIISNILSMDFDAWDDSLTSPHNLAKLLGDNTENQSGPLNKSSSWKVHSNNQSRFSFARQEESKIQMFDANASYGVNHQRPNNKVFQNFSERDLYMDKLGIANGFRTSNFEEAENIGSGHFISSNKLSAISRAQVSAPPGFSIPSRPPPPGFSSNERVEQAFDSISGNSMLDHSSLLRNSYQSPSAGNLGGAGDIEYMDPAILAVGKGRLQGALNSPALDIRSNFMPQLNYFENDARLQLLMQRSLSPQQNHRFSEIGNTFSQLGDSFAVSSRLDQSQVSNLSPFQQLSMQQSANAVLSNGQWDGWNEVQTGNGLGVAELLRNERLGFNKFYSGYDDSKFRMPNSGDLYNRTFGM 1191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g02003 1191 ProSiteProfiles Zinc finger RING-type profile. 204 252 IPR001841 -
Vimu5g02003 1191 FunFam RNA binding (RRM/RBD/RNP motifs) family protein 196 272 - -
Vimu5g02003 1191 SUPERFAMILY RNA-binding domain, RBD 299 344 IPR035979 GO:0003676
Vimu5g02003 1191 Pfam RING/Ubox like zinc-binding domain 204 256 - -
Vimu5g02003 1191 MobiDBLite consensus disorder prediction 553 596 - -
Vimu5g02003 1191 MobiDBLite consensus disorder prediction 504 546 - -
Vimu5g02003 1191 MobiDBLite consensus disorder prediction 445 464 - -
Vimu5g02003 1191 SUPERFAMILY RING/U-box 194 261 - -
Vimu5g02003 1191 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 192 272 IPR013083 -
Vimu5g02003 1191 Gene3D - 306 360 IPR012677 -
Vimu5g02003 1191 CDD mRING-HC-C4C4_CNOT4 203 253 IPR039515 -
Vimu5g02003 1191 PANTHER CCR4-NOT TRANSCRIPTION COMPLEX RELATED 196 1185 IPR039780 GO:0004842|GO:0030014
Vimu5g02003 1191 MobiDBLite consensus disorder prediction 425 596 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g02003 Vimu-Chr5 31851350 31860296 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g02003 K10643 - gmx:100801880 1668.29
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu5g02003 5 31851350 31860296 Vimu4g00582 4 4282588 4283064 PCT