Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g00582 ATGGATCCTGCTATTTTGGCAGTTGGTAAAGGGAGAATTCATGGTGCACGAAATAGCCCATTGCTGGACATGCGATCCAATTATCCTGAACAGTTAAATTATTTGGAAAATGAGGCTAGAGTTCAATTATTGATGCAAAGATCTCTATCACCACAGCAAAACCTTCGATTTTCTGATATTGGAAATTCCTTTTCTCAGTTTGGTGATTCCTATGGCATCTCTTCTAGGTTAAATCAATCACAAGTCAGTAGTCTGGCTCCATTTCCTCAGTTGTCTCTTCAGCAGTCTAGAAATGCAGTCTTGTCAAATGGTCAATTGGATGGATGGAATGAAGTGCAGAGTGGAAATAGTTTGGGTGTGGCCGAGCTTTTGAGAAATGAAAGACTTGGATTTAACAAGTTTTATAGAGGATATGATGAAACAAAATATCGGATGCCTAATTCTAGGGATCTGTACAACAGAACATTTGGGATTTGA 477 0.3878 MDPAILAVGKGRIHGARNSPLLDMRSNYPEQLNYLENEARVQLLMQRSLSPQQNLRFSDIGNSFSQFGDSYGISSRLNQSQVSSLAPFPQLSLQQSRNAVLSNGQLDGWNEVQSGNSLGVAELLRNERLGFNKFYRGYDETKYRMPNSRDLYNRTFGI 158
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g00582 158 PANTHER CCR4-NOT TRANSCRIPTION COMPLEX RELATED 1 152 IPR039780 GO:0004842|GO:0030014
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g00582 Vimu-Chr4 4282588 4283064 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g00582 K10643 - gmx:100796804 288.115
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu4g00582 4 4282588 4283064 Vimu4g00582 4 4282588 4283064 ECH
Vimu5g02003 5 31851350 31860296 Vimu4g00582 4 4282588 4283064 PCT