Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g01993 ATGAGAACAAGCAACCACCTGATCGGTGTGCTAAACTTCCTAACGTTTCTGTTGTCGGTTCCGATCCTAGGTGGTGGGATATGGCTGAGCAGCAGAGCGAACAACACGGACTGTCTGAAGTTCCTGCAGTGGCCGTTGATCATAATCGGAGTGAGCATCATGGTGGTGTCGCTGGCGGGTTTCGCCGGCGCGTGTTACCGGAACACGTTTCTGATGCGGCTGTACCTGGTGGTGATGTTCGTGGTGATTGCGGTGCTGATCGGCTTCATCATATTCGCGTACGTGGTGACGGACAAAGGGTCGGGTCGTAGGGTGATGAACCAGGCGTATTTGGAGTACTACTTGGAGGACTATTCGGGGTGGTTGGAGGAGCGCGTGGCGAGTGATAGCTACTGGGGGAAGATAGGTTCGTGCATTAGGGATTCCAGAGTGTGTGCGAAGATGGGGAGAACCATTAATGGAGTTCCTGAAACTGCTGAAATGTTCTACGTTAGACACCTCACACCTATTCAGTCTGGTTGCTGCAAGCCCCCCACAGAATGTGGTTATGTGTATCAGAATGAGACTGTGTGGAACCTAGGATCAGGATTGATGGGAGCCAATGCAGACTGCACAAGGTGGAGCAATGATCAAGAACAACTTTGCTATGCTTGTAATTCCTGCAAGGCTGGTGTGCTGGCAAGTCTGAAGAAGAGTTGGAGGAAGGTATCAGTGATCAACATTGTTGTTATGATCCTCCTTGTCATTGTTTACATAGTTGCTTATGCAGCATATAGGAACAACAAGAGGATGGATAATGATGAACCCTATGGTGAAGCCAGGATGACAAAGGCACAACCTAGTGCCTTTCATCTTTAG 858 0.4953 MRTSNHLIGVLNFLTFLLSVPILGGGIWLSSRANNTDCLKFLQWPLIIIGVSIMVVSLAGFAGACYRNTFLMRLYLVVMFVVIAVLIGFIIFAYVVTDKGSGRRVMNQAYLEYYLEDYSGWLEERVASDSYWGKIGSCIRDSRVCAKMGRTINGVPETAEMFYVRHLTPIQSGCCKPPTECGYVYQNETVWNLGSGLMGANADCTRWSNDQEQLCYACNSCKAGVLASLKKSWRKVSVINIVVMILLVIVYIVAYAAYRNNKRMDNDEPYGEARMTKAQPSAFHL 285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g01993 285 PRINTS Transmembrane four family signature 39 65 - -
Vimu5g01993 285 PRINTS Transmembrane four family signature 66 94 - -
Vimu5g01993 285 PRINTS Transmembrane four family signature 6 29 - -
Vimu5g01993 285 PANTHER TETRASPANIN-8-RELATED 1 264 IPR044991 GO:0009734|GO:0016020
Vimu5g01993 285 Pfam Tetraspanin family 6 253 IPR018499 GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g01993 Vimu-Chr5 31725176 31729509 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g01993 1 277 Miscellaneous Gene Families AT5G60220 72.563 2.23e-133 379
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g01993 - - gmx:100798336 521.931
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu4g00590 4 4363491 4368205 Vimu5g01993 5 31725176 31729509 PCT