Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g01932 ATGCTAACTCGTGAAAGACTCCTCCTTTCGCTCTTCCTCGCCACTCTTCTTCTCTTCTCCTCCCTCTCCCTCTCTCTCTCCGACAACCCCTCTCCAAACGACAACAAAAACAAGGAAAACGACAGCGATGACGATGAAGATCTCAGTTTCCTCGAGGAACCTGACGACGTCGCCGCCACTTCGCACCGCGCCCACTTCCCAGATCCCGACCACTTCAACGACGATGAAGACGACGACGACGACTTTGGCGATTTCTCCGGCTTCGACTCCTCCACCGAGGAGGCGTTCAAGGAGCCCGCGGTCGATGACAAGGACGTCGTCGTTTTGAAGGAGCGCAACTTCACCACCGTCATCGAGAACAACCGCTTCGTCATGGTCGAGTTCTACGCCCCCTGGTGTGGCCACTGCCAGGCCCTTGCGCCTGAGTACGCCGCTGCCGCTACCGAGCTCAAGCCCGACGGCGTTGTTTTGGCCAAGGTCGACGCCACCATCGAGAACGAATTGGCGCACGAGTACGATGTCCAGGGCTTCCCCACTGTGTTCTTCTTCATCGATGGCGTTCACAAGCCTTACACTGGCCAAAGAACCAAAGATGGTATAGTGACATGGATCAAGAAGAAGATAGGACCTGGTGTGTCCAACATAACCACCTTGGATGAAGCTGAACGCATATTGACCGCCGAAAGTAAAGTTGTTTTGGGCTTCCTGAACTCTTTAGTTGGTGCTGAGAGTGATGAACTAGCCGCAGCATCAAAGCTCGAGGATGGTGTCAATTTTTATCAAACTGTGGTACCTGAGGTGGCAAAGCTTTTCCATATTGATGCTAGTGTTAAACGCCCTGCTTTGATCTTGCTCAAAAAAGAGGAGGAGAAACTCAACCATTTTGATGGCAAATTTGTGAAATCTGAAATAGCTGAATTTGTATCCTCCAACAAGCTTCCTTTAGTTACAACTTTTACAAGAGAAAGTGCCCCAACAATATTTGAAAGTGAAATTAAGAAACAGTTGTTGCTGTTTGCGACTTCAAATGATACAGAGAAGTTTCTTCCAGTATTTAAAGAATCTGCAAAACTTTTTAAGGGCAAGCTGATATTTGTTCTTGTGGAAATGGATAATGAAGATGTTGGAAAGCCGGTTGCAGATTATTTTGGTATCACTGGGAATGACCCCAAAGTACTTGCATACACAGGCAATGATGATGGAAGAAAATTTTTGCTTGATGGAGACGTGTCTGTTGACAAAATAACGGCGTTTGGAAATGATTTTCTTGAAGACAAGCTAAAACCTTTCCTCAAGTCAGACCCAGTTCCTGAAAGCAATGATGGTGATGTGAAAATAGTTGTTGGAAATAACTTTGATGAAATCGTCTTGGACGAGTCAAAGGATGTTCTGCTTGAGATTTATGCTCCCTGGTGTGGCCACTGCCAAGCTCTGGAACCAACATACAACAAGCTTGCTAAACATCTTCGCAGCATTGAGTCTATTGTTATAGCCAAGATGGACGGAACAACAAATGAGCATCCCAGGGCCAAGGCTGAAGGATTTCCCACTCTTCTCTTCTACCCAGCAGCAAACAAGAGTTCTGATCCTATTCCTGTTGATGTGGATCGTACAGTGGTAGCCTTTTACAAGTTCCTCAGGAAACATGCATCAATCCCATTCCAGCTCCAGAAACCAGCCACAACTTCTGAACCCAGTAGCGATAGTTCTGATGTGAAGGAGAGCCAGAGCAGCAGCACTGATGTGAAGGATGAATTTGAAAAGGTGCTTAACAAAGGAATGATTGGATGCGAAAAACCGTCCAGTTTCCCTCACTCTGACCAAGACAAATAG 1833 0.4675 MLTRERLLLSLFLATLLLFSSLSLSLSDNPSPNDNKNKENDSDDDEDLSFLEEPDDVAATSHRAHFPDPDHFNDDEDDDDDFGDFSGFDSSTEEAFKEPAVDDKDVVVLKERNFTTVIENNRFVMVEFYAPWCGHCQALAPEYAAAATELKPDGVVLAKVDATIENELAHEYDVQGFPTVFFFIDGVHKPYTGQRTKDGIVTWIKKKIGPGVSNITTLDEAERILTAESKVVLGFLNSLVGAESDELAAASKLEDGVNFYQTVVPEVAKLFHIDASVKRPALILLKKEEEKLNHFDGKFVKSEIAEFVSSNKLPLVTTFTRESAPTIFESEIKKQLLLFATSNDTEKFLPVFKESAKLFKGKLIFVLVEMDNEDVGKPVADYFGITGNDPKVLAYTGNDDGRKFLLDGDVSVDKITAFGNDFLEDKLKPFLKSDPVPESNDGDVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQALEPTYNKLAKHLRSIESIVIAKMDGTTNEHPRAKAEGFPTLLFYPAANKSSDPIPVDVDRTVVAFYKFLRKHASIPFQLQKPATTSEPSSDSSDVKESQSSSTDVKDEFEKVLNKGMIGCEKPSSFPHSDQDK 610
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g01932 610 FunFam protein disulfide-isomerase A2 208 312 - -
Vimu5g01932 610 Gene3D Glutaredoxin 209 312 - -
Vimu5g01932 610 FunFam Protein disulfide-isomerase 439 552 - -
Vimu5g01932 610 ProSitePatterns Thioredoxin family active site. 125 143 IPR017937 -
Vimu5g01932 610 MobiDBLite consensus disorder prediction 56 71 - -
Vimu5g01932 610 SUPERFAMILY Thioredoxin-like 100 209 IPR036249 -
Vimu5g01932 610 CDD PDI_b'_family 323 423 - -
Vimu5g01932 610 Gene3D Glutaredoxin 438 552 - -
Vimu5g01932 610 Gene3D Glutaredoxin 93 208 - -
Vimu5g01932 610 ProSitePatterns Thioredoxin family active site. 464 482 IPR017937 -
Vimu5g01932 610 SUPERFAMILY Thioredoxin-like 311 441 IPR036249 -
Vimu5g01932 610 FunFam Protein disulfide-isomerase 313 438 - -
Vimu5g01932 610 ProSiteProfiles Thioredoxin domain profile. 87 230 IPR013766 -
Vimu5g01932 610 Gene3D Glutaredoxin 313 437 - -
Vimu5g01932 610 SUPERFAMILY Thioredoxin-like 440 551 IPR036249 -
Vimu5g01932 610 MobiDBLite consensus disorder prediction 26 84 - -
Vimu5g01932 610 CDD PDI_b_family 212 311 - -
Vimu5g01932 610 MobiDBLite consensus disorder prediction 556 585 - -
Vimu5g01932 610 MobiDBLite consensus disorder prediction 556 576 - -
Vimu5g01932 610 SUPERFAMILY Thioredoxin-like 215 323 IPR036249 -
Vimu5g01932 610 NCBIfam protein disulfide-isomerase 104 571 IPR005792 GO:0003756
Vimu5g01932 610 Pfam Thioredoxin-like domain 247 420 - -
Vimu5g01932 610 PANTHER PROTEIN DISULFIDE ISOMERASE 15 558 - -
Vimu5g01932 610 NCBIfam protein disulfide-isomerase domain 110 207 IPR005788 GO:0003756
Vimu5g01932 610 ProSiteProfiles Thioredoxin domain profile. 430 551 IPR013766 -
Vimu5g01932 610 PRINTS Thioredoxin family signature 132 141 - -
Vimu5g01932 610 PRINTS Thioredoxin family signature 124 132 - -
Vimu5g01932 610 PRINTS Thioredoxin family signature 173 184 - -
Vimu5g01932 610 CDD PDI_a_family 107 204 - -
Vimu5g01932 610 Pfam Thioredoxin 106 206 IPR013766 -
Vimu5g01932 610 Pfam Thioredoxin 444 527 IPR013766 -
Vimu5g01932 610 CDD PDI_a_PDI_a'_C 444 546 - -
Vimu5g01932 610 FunFam Protein disulfide-isomerase 95 207 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g01932 Vimu-Chr5 31221055 31224598 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g01932 K09580 - gmx:100790223 918.302
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu4g00624 4 4637548 4641666 Vimu5g01932 5 31221055 31224598 PCT