Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g00624 ATGCGAATCATTTTCCTTCTCTCCCTCGCCACGCTCCTCCTCTTCTCCTCCTTCTCTTCCACCCTCAGCGCCGCCCCGCCCGCGGCCGACGACGACAATGAAGACCTCAGTTTCCTCGAAGAGGAGACCTCCACACCGGACCACCACCAAGACCACTTCGATGACGCCAATTACGACTTCGACGACTTCGAGGACGACTCCGAGGCCTACAAGCAGCCTCAGGTTGACGAGAAAGATGTCGTCGTTTTGAAGGACAAGAATTTCAGCGACGTCATCAAGAACAACCGCTTCGTCATGGTCGAGTTCTACGCGCCGTGGTGCGGCCACTGTCAGGCACTCGCGCCGGAGTACGCCGCCGCCGCCTCCGAGCTCAAGGGCGAAGATGTCATTTTGGCGAAGGTCGATGCCACGGAGGAGAATGAATTGGGGCAGCAATACGATGTACAGGGTTTCCCCACTATCTACTTCTTCGCTGATGGCATTCACAAGCCTTATAATGGCCAAAGGACCAAGGATGCTATAGTAACGTGGATTAAGAAGAAAACTGGACCTGGTGTATACAACTTGACTACATTGGAGGATGCTCAACGTATTTTGGCCAACGAAACTAAAGTTGTTTTGGGCTTCCTCAACTCTTTAGTTGGTTCTGAGAGTGAGGAGCTTGCTGCCGCTTCAAGACTTGAGGATGATGTCAATTTTTATCAGACTGTGAATTCTGACGTGGCAAAGCTTTTCCATATTGATGCCGATGCTAAGCGCCCTGCTTTGATCCTCGTCAAGAAGGAGGAAGAAAAACTTAGCCACTTTGATGGCAAATTTGAGAAGTCTGCAATAGCGGACTTTGTCTTTTCAAACAAGCTTCCTTTGGTAACAATTTTTACAAGAGAAAGTGCCCCAGCAGTTTTTGAAAATTCAATCAAGAAGCAGGTGCTGCTGTTTGCAACTTCAAATGATTCAGAGAAGTTCATCCCAGTATTTCAAGAAGCAGCAAAATCTTTCAAGGGAAAGTTGATTTTTGTATCCGTTGATCTAGATAATGAAGATGTTGGAAAGCCTGTTTCAGAATACTTTGGTATCAGTGGAGATGGTCCAAAAGTACTTGGATACACTGGGAATGATGATGGAAGAAAATTTGTGCTTGACGGAGAGGTGACAGCTGACAGAATTAAGGCATTTGGGGAGGATTTTCTCGATGACAAGCTGAAACCATTTTACAAGTCAGATCCAATCCCTGAAAGTAATGATGGTGATGTGAAAATAGTAGTTGGGGATAATTTTGATGAAATTGTCTTGGATGAGTCAAAGGATGTTCTCCTTGAGATTTATGCTCCCTGGTGTGGCCATTGCCAATCACTGGAGCCAATATATGACAAGCTTGCGAAACATCTTCGTAGTATCGAGTCTCTTGTAATAGCCAAGATGGATGGAACAACAAATGAGCACCCCAGGGCTAAGCCCGACGGATTCCCCACCCTTCTTTTCTTCCCAGCAGGAAACAAGAGTTTTGAACCTATTACTGTTGATACAGATCGTACTGTGGTGGCCTTCTACAAGTTCCTCAAAAAACATGCATCAATTCCATTCAAGCTCCAGAAACCAACCTCACCTACTCAATCCGAGAGCTCTGGCGCCAAGGAGAGCTCTGATGACAAAGAGAGACAGAGTAGCAATAGTGACGTGAAGGATGAATTATGA 1695 0.4637 MRIIFLLSLATLLLFSSFSSTLSAAPPAADDDNEDLSFLEEETSTPDHHQDHFDDANYDFDDFEDDSEAYKQPQVDEKDVVVLKDKNFSDVIKNNRFVMVEFYAPWCGHCQALAPEYAAAASELKGEDVILAKVDATEENELGQQYDVQGFPTIYFFADGIHKPYNGQRTKDAIVTWIKKKTGPGVYNLTTLEDAQRILANETKVVLGFLNSLVGSESEELAAASRLEDDVNFYQTVNSDVAKLFHIDADAKRPALILVKKEEEKLSHFDGKFEKSAIADFVFSNKLPLVTIFTRESAPAVFENSIKKQVLLFATSNDSEKFIPVFQEAAKSFKGKLIFVSVDLDNEDVGKPVSEYFGISGDGPKVLGYTGNDDGRKFVLDGEVTADRIKAFGEDFLDDKLKPFYKSDPIPESNDGDVKIVVGDNFDEIVLDESKDVLLEIYAPWCGHCQSLEPIYDKLAKHLRSIESLVIAKMDGTTNEHPRAKPDGFPTLLFFPAGNKSFEPITVDTDRTVVAFYKFLKKHASIPFKLQKPTSPTQSESSGAKESSDDKERQSSNSDVKDEL 564
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g00624 564 Pfam Thioredoxin 418 503 IPR013766 -
Vimu4g00624 564 Pfam Thioredoxin 80 180 IPR013766 -
Vimu4g00624 564 NCBIfam protein disulfide-isomerase domain 83 181 IPR005788 GO:0003756
Vimu4g00624 564 ProSitePatterns Thioredoxin family active site. 438 456 IPR017937 -
Vimu4g00624 564 PANTHER PROTEIN DISULFIDE ISOMERASE 12 561 - -
Vimu4g00624 564 SUPERFAMILY Thioredoxin-like 187 297 IPR036249 -
Vimu4g00624 564 SUPERFAMILY Thioredoxin-like 73 183 IPR036249 -
Vimu4g00624 564 MobiDBLite consensus disorder prediction 544 564 - -
Vimu4g00624 564 NCBIfam protein disulfide-isomerase 78 564 IPR005792 GO:0003756
Vimu4g00624 564 FunFam Protein disulfide-isomerase 413 526 - -
Vimu4g00624 564 ProSitePatterns Thioredoxin family active site. 99 117 IPR017937 -
Vimu4g00624 564 PRINTS Thioredoxin family signature 98 106 - -
Vimu4g00624 564 PRINTS Thioredoxin family signature 106 115 - -
Vimu4g00624 564 PRINTS Thioredoxin family signature 147 158 - -
Vimu4g00624 564 SUPERFAMILY Thioredoxin-like 285 415 IPR036249 -
Vimu4g00624 564 CDD PDI_b_family 186 285 - -
Vimu4g00624 564 Pfam Thioredoxin-like domain 221 392 - -
Vimu4g00624 564 Gene3D Glutaredoxin 283 412 - -
Vimu4g00624 564 FunFam protein disulfide-isomerase A2 182 286 - -
Vimu4g00624 564 SUPERFAMILY Thioredoxin-like 414 525 IPR036249 -
Vimu4g00624 564 CDD PDI_a_family 81 178 - -
Vimu4g00624 564 FunFam Protein disulfide-isomerase 287 412 - -
Vimu4g00624 564 CDD PDI_a_PDI_a'_C 418 520 - -
Vimu4g00624 564 Gene3D Glutaredoxin 68 182 - -
Vimu4g00624 564 ProSiteProfiles Thioredoxin domain profile. 61 183 IPR013766 -
Vimu4g00624 564 FunFam Protein disulfide-isomerase 69 181 - -
Vimu4g00624 564 CDD PDI_b'_family 303 397 - -
Vimu4g00624 564 Gene3D Glutaredoxin 183 282 - -
Vimu4g00624 564 Gene3D Glutaredoxin 413 526 - -
Vimu4g00624 564 ProSiteProfiles Thioredoxin domain profile. 395 525 IPR013766 -
Vimu4g00624 564 MobiDBLite consensus disorder prediction 530 564 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g00624 Vimu-Chr4 4637548 4641666 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g00624 K09580 - gmx:100804924 907.901
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu4g00624 4 4637548 4641666 Vimu4g00624 4 4637548 4641666 ECH
Vimu4g00624 4 4637548 4641666 Vimu5g01932 5 31221055 31224598 PCT