Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g01923 ATGAAGAAACTGCCGAAATCGTTTCGTAAGCATATGGTGCCCAAAAGGATTGGGCCTGACCCGGCCCGCCAATCTGAGCTGGTGAGTCGTGGCGCTACCTGTCAGACCGAGCCGAGACAAGCAGCGACTGGCAGCGCAACAACATTTTGCTTCAAAACCCCAACCCTCTCTATGTCTTCGCCAACACACTCTCACACACACTCTCTCTCTAAAATCACAACTATGAACGACGACGAAACAGAGTCCGATGGAGAGATTAGGGCTTCCGTCGAACCCGTTTCGGAGGATGCTCCATCCAGCCCCGGTAGCAGCGGCACCAGCGCAACCACTGGTTCGCAATTCGAAATTGAGCACGAAGAAATAGAAGAGGACACGACGATTGATATGGACAGAATCTCGATTTCCGATTCCCATGCGTCGTGGATTCCCGGCAAACGGCACTTCGATGAGGATGATGGCTCCATATCATGGAGGAAGAGGAAGAAACATTTTTTCGTTCTCAGTCATTCCGGCAAACCTATATATTCCAGGGGCGACTCTGTCAAATCGGTGAGGGCTGGGAGGCATCAGGTGATTTTTCTAGTGAAAGGACCAATTTACTTAGTCTGCATCAGCTCCACAGAAGAACCTTACGCCTCATTAAGGGGGCAGTTAGAGCTAATTTATGGTCAGATGCTTGTTATACTAACAAAATCAATAAATAGATGTTTTGAGAAGAACCCAAAGTTTGATATGACACCCTTGCTTGGTGGAACAGAAATTGTCTTCTCTTCTCTAATACACTCTTTCAGCTGGAACCCAGCCACATTTCTTCATGCCTATACTTGTCTCCCTCTTGCATATGCAACAAGGCAAGCTGCAGGAGCTATTTTGCAAGATGTTGCTGATACGGGTGTTTTGTTTGCAATACTTATGTGCAGGCACAAGGTAATCAGTCTCGTTGGTGCTCAGAAAGCTTCCCTTCACCCAGATGATATACTGCTTTTGGCCAACTTTGTCATGTCATCTGAATCCTTCAGGCAAGCTGACACATACTTGGTGTTACTATCCACTAATTCTGATGCATTTTATCATCTTAAGGATTGCAGGATTCGTGTTGAAAATGTTCTTTTGAAGTCATGTGTCCTTAGTGAAGTTCAGAGATCCTTGTTAAACGGGGGAATGCATGTTGAAGATCTGCCACCTATATCTCATTCTGGATCATCTCATTTGGGCCAGCACATGCTTCCATCAGATTCTCCTGACAGATTTAGGGAAGCTAATTCTGGCATTGGGGGTCCTGCTGGGTTGTGGCATTTCATATACCGCAGTATATATCTTGACCAGTATGTCTCCTCGGAATTCCCACCATCAATCAATACGCCTCAGCTGCAAAAAAGACTGTATAGAGCTTACGAGAAACTTTTTGCATCCATGCATGATAAAGGAATCGGGCCACACAAAACTCAATTTAGAAGAGATGAAAACTACGGTAATAAATCACACCCGATAGATTTTGAGCTCTATGCTGCCTTTGATCCCCTCGCAGACAAGGCCTTGGCAATCAAGACGTGCAACCATGTTTGTCAGTGGATAAAAGATGTGGAAAATGAAATATTTTTGCTAGGAGCTAGCCCCTTTTCATGTCTTGGTTCTTTTCTCAGTCTTTTCTTAGAGTTGATACCTTACATCTATAAAAGACGTTCAACTGATTTTTGCGCTTCTAGTAATATGAATGAAGTATTTGGTGGAGGCAGCCGATAG 1743 0.4475 MKKLPKSFRKHMVPKRIGPDPARQSELVSRGATCQTEPRQAATGSATTFCFKTPTLSMSSPTHSHTHSLSKITTMNDDETESDGEIRASVEPVSEDAPSSPGSSGTSATTGSQFEIEHEEIEEDTTIDMDRISISDSHASWIPGKRHFDEDDGSISWRKRKKHFFVLSHSGKPIYSRGDSVKSVRAGRHQVIFLVKGPIYLVCISSTEEPYASLRGQLELIYGQMLVILTKSINRCFEKNPKFDMTPLLGGTEIVFSSLIHSFSWNPATFLHAYTCLPLAYATRQAAGAILQDVADTGVLFAILMCRHKVISLVGAQKASLHPDDILLLANFVMSSESFRQADTYLVLLSTNSDAFYHLKDCRIRVENVLLKSCVLSEVQRSLLNGGMHVEDLPPISHSGSSHLGQHMLPSDSPDRFREANSGIGGPAGLWHFIYRSIYLDQYVSSEFPPSINTPQLQKRLYRAYEKLFASMHDKGIGPHKTQFRRDENYGNKSHPIDFELYAAFDPLADKALAIKTCNHVCQWIKDVENEIFLLGASPFSCLGSFLSLFLELIPYIYKRRSTDFCASSNMNEVFGGGSR 580
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g01923 580 MobiDBLite consensus disorder prediction 96 114 - -
Vimu5g01923 580 MobiDBLite consensus disorder prediction 72 90 - -
Vimu5g01923 580 MobiDBLite consensus disorder prediction 1 116 - -
Vimu5g01923 580 PRINTS Saccharomyces cerevisiae 73.5kDa hypothetical protein signature 520 540 IPR004353 GO:0006623
Vimu5g01923 580 PRINTS Saccharomyces cerevisiae 73.5kDa hypothetical protein signature 507 520 IPR004353 GO:0006623
Vimu5g01923 580 PRINTS Saccharomyces cerevisiae 73.5kDa hypothetical protein signature 162 179 IPR004353 GO:0006623
Vimu5g01923 580 MobiDBLite consensus disorder prediction 28 71 - -
Vimu5g01923 580 PANTHER SAND PROTEIN-RELATED 40 177 IPR004353 GO:0006623
Vimu5g01923 580 Pfam Second Longin domain of FUZ, MON1 and HPS1 298 359 IPR043971 GO:0016192
Vimu5g01923 580 Pfam First Longin domain of FUZ, MON1 and HPS1 178 259 IPR043972 GO:0016192
Vimu5g01923 580 Pfam Third Longin domain of FUZ, MON1 and HPS1 429 529 IPR043970 GO:0016192
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g01923 Vimu-Chr5 31128467 31134417 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g01923 K20195 - gmx:100814534 672.93
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu4g00632 4 4696937 4702564 Vimu5g01923 5 31128467 31134417 PCT