Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g01896 ATGAAGGACGATACCAATTCCAGTTGCGTAACGGATAAAGGACCGGTGACAAGGTCTTCGACAGAGACATTGTCCAAGAAAGTTGCTGCGAGCACTTCCGTCTCTCCAAATCGCAAGTCGGGAAGGCTTGAGAAAAGGTCTCCACCGTTGCCTGGGGGCATAATGGATCCGAAGAAGAAGTCGGAGATGCCGAATCCGTTGAGGAGATCTGAGAGAACGAGGAGGGCTTCTCCTTCGGATCCTTCTGCTTCCAGAAGTTCCGGTTCGGACATGCGGCTGAAGAAGCATTGCACTGGGAAGCAGTTGTTGTTTGAAGCCAGCGAGGATGGGGACGATGAAGATGACGTGGAAGCTTCTTCGAGACCCAGAACTAGGAGAGTGACTGAGCATTGCCATGTGAAGACAAATGGGATGAATAGGTCAACTGAAGAAGGTGATGACGAGGGTGGGAGCAAGACTGATGGCTGTCTTAAAGGGAACTGTTTAGATTCTGCCAACGAAGATATGGATATTGAGCTGCCTGAAGATGCCACCGGTAAAGAGATGAGAGCTGAGCCTAAGTTGAGTGAGCCAGTGAAAGAACTGTCAGATTATGATGTGACTGTAAATCCATTGGTACCGTCTAATACTGCAAGTTGTGAGCCCAGTGGGTTACCTGAAAAGGTTCGGTTTGATTCATGCAAAGAGGAGAGATCACAAAGTTTAGGGTCAAGGGATTTCATATCAAATGAAAATTTGATTAGGAAACGTATTGAGCATGATAAGGATGAAAAATCAATATCTTCTAAGAGAAAAAAAACAATGGTGGCCATGCATTCAGATGCTTCTACTTTATTGGTGGACAATGACAATAACAGCAACTTGTTTGAGGATACTCGCCCGTCAAGGATATGCAGGAATGTTGTGGAGACCAGTGGGTCATGTTCCAAAAGGATAAGGCAGATCTCCTTATCAGATGTGAAAAAGGATCAGAGGAAATCGACCGATAATGTTGACCAGTCCCCTTCAAAGATATCCACTAAGAACAAGAAAGGCGGAGCCAAAGGAGTAATACAGGTGGCTTTTCCTATCTTTGGTGAAGATTCTGATCTTTTCTATGGCCCTAGAAATGATTTGCTTGATTCCCACACCCTATGCACAAAACATGTGTTCCTTACTGTCAAAAGGCACTCACATTATCTTAGTGGTCTCAGATTCTTAGTTCTTATCATTTGTTTGTGTGATCAAATGTCAGACTCGGAGAGACCTCAAATGAACACTGTTGAAACTTACAAAATAAGGAAACAGCAGAGGAGCTTACATCTTTTACTGAAGCCAGAGATAGCAAATCTTTGTGAAATTCTGCATCTCCCTGTATGCTCTTGGTTTCTCTTTATCATGTTTTACTTGCCATTTGTTTTGATGTGGATAGGTGTTGGAAATGTGAAATCGAGGTTTAAAAGGGTAGATCCAGGTTATGTTGAAGAACCTGTTGACATGGAATATGGGATTTTGGTTGATAATGATAATGTCAAAAGTATGGTTCAAAATTGTCTTGAATATACTATGAACAATTACCAGATCTGTACAGAACCATTGCCAATATTACAGGCTTTTCAGCTATCACTGTGTTTGACAATTGCTGCTTTGCTAAATCACAAACTCAACTTTGAAGATTCCCTTTTGCTTGCAAAGCAGCATTTGAATTTTGACTGCAAAAAAGAAATTGTAGAGGAAATCAATTCAAGGCTTTGGGATCTGAAGGAAAAACTTTTATCGCTCAAAGGAAATGTTGCTGGCTGTGCAAAGGCTTCTGAATCGTCAAGTGGGGTTTATTCATATATTGAAGTGCCTGAGGATGAATTGGTAAAAGTTGATAATTCTATAAATATTAAAACCGTTCAGAAACGTAAAAGCCAGTGGAACAAGCTACTTCTGATGCAAAGGGAAGAGAGGATAAAGTTAAAAAAAGATATTGAGAATGAAAATGCTGAAATTCAGAGAAGGCACCAGATAGAGTGGGAAGCTATTCGATCATGTTCTCCCGATGATTTGACTAAAGATGGAAAGCTTCAGGCTTCGAAAAGGGCTTACATGAAAAGAACTGAAGAATTGAATAGGCAGCAAGAAATACGTCTCAAGGATCTTGAGGTCAAGCAATTAAAGGCAAGGCTGATGTTCCAAGAGTCTTCAGCACCATATGAATTGTTAAACCCAATTGCTTCTATCGAACTCGGGACAGTGGTCAAATCCTTACAGATTTGTGATCAAGCCCAACATCATAATGCTCCAAAAGTCCTTGCGTCTGATCATGTTGCTGAAGGAAAGGGTTCCAATGATACAGTGGAAGTCAAGGCAAGGATTGAATCTGGGGTTGGATTATCTGAAGCTCCCGATGCCAATGCCTCTGTTGTTGCACCATTCAGTTGCACAGTTGAACTGCAAACTCGTCTTGTTAAACATGCTGATGATGAGATGGACATAGTCTCTTCAAAAGATGGACTAGTATCTGAAATTAAGTGCAGTAATATTGTTGAAAATGTATATGAAAGTCATGGAAATGTTATATCTAAACATTCCAAATCCAGAGAGCAACGTTCTGATGGAGCTATTAGAGTGTCAGACGGGGAAGAGCGTGTAAATTTTAATCATGAATCTCATAATGATTCTAGGCAGGATGCTGTAATACAGGTTCTTGCTTCACATAATGAAGACATATGTCACGGGGAAACACTAGATGTTCTTAGTGCAGAGGTGGCTCCTCCAGTCTGTAACACCAGCAGTTCTGAGAATGATCTTGTTGAAATTCCTTCTTCTAGGCAAAGGGAACTAAATGGGACTATACAGATCAAGCCTGTGTGTGGATCATCAATAGAAGTTGATGGTAATGGTTCCAATGATGGTGCTAAAAATATGGCCTTATTGAATTCTCAGTCATCCGAAGAACATATTCCAAGTGTAAATACCATGTGCACACCATATTGTGAGAATACTGCACAAATCCATGACGCTGATAACAATTTTGGTTCAAAGAATGCTGACACTATGAACTCATCTTTGTGTGATGAAAGAATTTCCTCCTCGAATACAAAATCACCTCAAGATCGTGTCCATAATGAAAATGGCAAGCTCACTATAGATTGTGAAAATTTTGCCCTTGATGGCAGTGGTTCAGATAATTTTATTCTTAATTCTCCTTTGGTTGATGAGAGAAATGCTGATAGGACCATAATATTACATAGAGATGCACATGTGGGAATACATGAGGCTGTCAATTTGACTTCATCCGCTGAGCAAATGTCTAGAGGTGCAGTAAATGACTCAGTTTTTGATAGTGTGTTGCCAAAACCATATGGAGAGGATAGTTCCAGAAATAATAGCTCTGATGCTAATTCTATTCTTTCAAATCAAACTTCTATAGAGAAACAAAATCTTGATGGAGTCTCATCAAGCATACCTATTAGACAAATTCCAGTTGGAGTGTCAGAAACTAATGAGAGGGCCATTGTAAATGTATTAGATCGGGAGGAAGCTAGTTGGATGCCTGACGCTGTCAATTACCCTGACAATGTAATTCCTCATAATTCTTCATCCATGGATCAATTAGTTAATGGAGGTCCAGTATTTGATGGCAGTTTGTCATCAAAGACTTGTACTACAAGCCCAAGCAATAGCAAGACCCTACCTGATGAACACGTTTCTGTCTTGATGCCAGAAAATAGCCTTGGAGAGGTTGAATTCCAATTGACAAACAATGTGGATAAAAGTGCCACAATGGACCAGCAGGAAGGAGTATGTACAACCATGACTGAAAACAGTTCGTACCAGGAGACTCCAGTATCTAGACCTGTTGATGTTATGGAGTCTCTAGAACAAGTGCCGTCTTTATCATTTGTGGAGTCTCCTCCTGATCTGGATACTTCTAGAGAAACACGAAACCATGTAGTATCTACTGTTGTTGATGTTGTACAAGCGAATCAATCCATTAATGATTCACTGGTCATGGAGCCTCCACAGGAGGGGCAATTTCCTTCTGTGGGTTTCTTCTCTTCCAACTGGGACCTATCCAACTTGCCTTTGGTGACCAGAACTGAAAATCAGCCACACAATGAAGATGATCTCCTCGACCATGTTCCTGGAACATTAATTGAGATTCAAAATCAATCTCTTGTGCAACATCCCTCAAATTCAGACCAGCAGGAAGGAGTGTGTAGAACCATGAATGGTAACAGTTTGTCCCAGGAGACTCCAGTATCTTTATCAGTTGATGATCTCATGGAGCCTCTTGAAGAAGTGCAACCATTATCATCCTTAGAGTCTCCACCTGACCAGAATACTACAATAGAAATGCAGAACAGTTTGGTATCAAGTTCTGTTGATACTGTACCAGCTAACGTATCTACAGATAATTCACTGGTCAGGGAGCCACCGGAGAAGGAGGGTCAGTTACCTTCTGCAAATATCCTTTCTTCCAATGATGGAGACCTGTCTATCTTGCCTACAGTGACTGGAACTGAAAACCAGCCATCCATTGAAAAGGATTTTCCCAACCACATTCCCGAGACATCAATTGAGATTCAAGATCACGATGTTGTGCAATGCGCCTCAAATGTGGAATTGGATCCAGCCTCAAATATGAACTTGGTTTCGCAAGAGCTTGCTGGAGTTAGACAACAATCTTCAAACACAAGAAATCAGTCAACTCTTACAGAGATTAATAATCATCCTATACAACCTGCAAGCCAATCAGATTCCAGGATTATTCAACGTTTGGCTCTTGATCCGTTTAAGTGTGAAATGACAAGACTACATCAACTGGCAGAGGATAATAAGAAAGACTTTGAAGAAAGGAAATTGAAGTTGAAACAGGATTTTGAGAAGGAAGTCGAGGAACTTTACAGGAAGTTTGACATTAAACACAAGGAGAATGAAGTTGAAGTACAGAAAGTAAGGAAGGACCTGGACAAACAACATAGCATAGTTAATGAAAATATGAAATTGGCTGAGGCTTGTAGGGTTAAATCCATGGATTTTACACTATCTGGTGCACCAAGCATGCACAAAGGGCCTTTGGAATCAATATCTCAAACACCGCTGGCGTTTTCTGTTTTCTTCTTTATACACAGGAAAAAACTACGAGTGCATTTGCCAAGTGCAGTTAAGGATGGTTTAGTTTTATATGCAAGTTCTGTTCAGCAATTATTTCAGGTTGCAAGTCCACAAAATGCCACTGCGCCCAATGTGGTTGTCAGACCATCTTGGGAGTATTCTGCAGCCAGCTTGCAGAGTTCCTATGCTACAACTACCTCACAGACTACGGTACAACCAATACAAGCCTCGTACAGTACGCCCGGAACATTCTCCGTTAATTCTTCAAGACTACCACGTATCAACCCCCTCTCTTCGTTCTTGGGAAATGTTCAAACTGGTGGGGAGATACGTGCCCCTGCACCACATCTCCACCCTTATAGAACACCGACGTCTGTCCCAGCCTCCACTTTCTGTACAGTTCCGCGTGGGAGACCAAGTCAGCCTGCACCCGGTAATATTCCTGTAACTTTCCCCCCGTTTTCTTACCAGACACCCTGGCCAGCGCTGGCAACCCTTCCATCTGTTCTACACGGGGGCCTTTGGCCACCCACTTTACCTGCCATTAATCCTCACACTGATCCTAACAGTCAACACGGCATATATCTGCCAAATGTTCGGCCACATATGCCAGATTTGCCTACGATGAACCTATCTAAATGTGACAAAAGTAGTACAACGCCAGCAACCTCAGCTCATCCAGCTACATCATCTGATGTAGTCTGTTTATCAGATGATGAATGA 5811 0.4166 MKDDTNSSCVTDKGPVTRSSTETLSKKVAASTSVSPNRKSGRLEKRSPPLPGGIMDPKKKSEMPNPLRRSERTRRASPSDPSASRSSGSDMRLKKHCTGKQLLFEASEDGDDEDDVEASSRPRTRRVTEHCHVKTNGMNRSTEEGDDEGGSKTDGCLKGNCLDSANEDMDIELPEDATGKEMRAEPKLSEPVKELSDYDVTVNPLVPSNTASCEPSGLPEKVRFDSCKEERSQSLGSRDFISNENLIRKRIEHDKDEKSISSKRKKTMVAMHSDASTLLVDNDNNSNLFEDTRPSRICRNVVETSGSCSKRIRQISLSDVKKDQRKSTDNVDQSPSKISTKNKKGGAKGVIQVAFPIFGEDSDLFYGPRNDLLDSHTLCTKHVFLTVKRHSHYLSGLRFLVLIICLCDQMSDSERPQMNTVETYKIRKQQRSLHLLLKPEIANLCEILHLPVCSWFLFIMFYLPFVLMWIGVGNVKSRFKRVDPGYVEEPVDMEYGILVDNDNVKSMVQNCLEYTMNNYQICTEPLPILQAFQLSLCLTIAALLNHKLNFEDSLLLAKQHLNFDCKKEIVEEINSRLWDLKEKLLSLKGNVAGCAKASESSSGVYSYIEVPEDELVKVDNSINIKTVQKRKSQWNKLLLMQREERIKLKKDIENENAEIQRRHQIEWEAIRSCSPDDLTKDGKLQASKRAYMKRTEELNRQQEIRLKDLEVKQLKARLMFQESSAPYELLNPIASIELGTVVKSLQICDQAQHHNAPKVLASDHVAEGKGSNDTVEVKARIESGVGLSEAPDANASVVAPFSCTVELQTRLVKHADDEMDIVSSKDGLVSEIKCSNIVENVYESHGNVISKHSKSREQRSDGAIRVSDGEERVNFNHESHNDSRQDAVIQVLASHNEDICHGETLDVLSAEVAPPVCNTSSSENDLVEIPSSRQRELNGTIQIKPVCGSSIEVDGNGSNDGAKNMALLNSQSSEEHIPSVNTMCTPYCENTAQIHDADNNFGSKNADTMNSSLCDERISSSNTKSPQDRVHNENGKLTIDCENFALDGSGSDNFILNSPLVDERNADRTIILHRDAHVGIHEAVNLTSSAEQMSRGAVNDSVFDSVLPKPYGEDSSRNNSSDANSILSNQTSIEKQNLDGVSSSIPIRQIPVGVSETNERAIVNVLDREEASWMPDAVNYPDNVIPHNSSSMDQLVNGGPVFDGSLSSKTCTTSPSNSKTLPDEHVSVLMPENSLGEVEFQLTNNVDKSATMDQQEGVCTTMTENSSYQETPVSRPVDVMESLEQVPSLSFVESPPDLDTSRETRNHVVSTVVDVVQANQSINDSLVMEPPQEGQFPSVGFFSSNWDLSNLPLVTRTENQPHNEDDLLDHVPGTLIEIQNQSLVQHPSNSDQQEGVCRTMNGNSLSQETPVSLSVDDLMEPLEEVQPLSSLESPPDQNTTIEMQNSLVSSSVDTVPANVSTDNSLVREPPEKEGQLPSANILSSNDGDLSILPTVTGTENQPSIEKDFPNHIPETSIEIQDHDVVQCASNVELDPASNMNLVSQELAGVRQQSSNTRNQSTLTEINNHPIQPASQSDSRIIQRLALDPFKCEMTRLHQLAEDNKKDFEERKLKLKQDFEKEVEELYRKFDIKHKENEVEVQKVRKDLDKQHSIVNENMKLAEACRVKSMDFTLSGAPSMHKGPLESISQTPLAFSVFFFIHRKKLRVHLPSAVKDGLVLYASSVQQLFQVASPQNATAPNVVVRPSWEYSAASLQSSYATTTSQTTVQPIQASYSTPGTFSVNSSRLPRINPLSSFLGNVQTGGEIRAPAPHLHPYRTPTSVPASTFCTVPRGRPSQPAPGNIPVTFPPFSYQTPWPALATLPSVLHGGLWPPTLPAINPHTDPNSQHGIYLPNVRPHMPDLPTMNLSKCDKSSTTPATSAHPATSSDVVCLSDDE 1936
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g01896 1936 Coils Coil 692 712 - -
Vimu5g01896 1936 Coils Coil 638 662 - -
Vimu5g01896 1936 MobiDBLite consensus disorder prediction 116 153 - -
Vimu5g01896 1936 MobiDBLite consensus disorder prediction 1 155 - -
Vimu5g01896 1936 MobiDBLite consensus disorder prediction 8 38 - -
Vimu5g01896 1936 MobiDBLite consensus disorder prediction 1902 1936 - -
Vimu5g01896 1936 Gene3D - 1586 1667 - -
Vimu5g01896 1936 PANTHER HELICASE PROTEIN MOM1 16 451 IPR039322 GO:0031507
Vimu5g01896 1936 MobiDBLite consensus disorder prediction 1460 1487 - -
Vimu5g01896 1936 MobiDBLite consensus disorder prediction 319 344 - -
Vimu5g01896 1936 MobiDBLite consensus disorder prediction 1105 1124 - -
Vimu5g01896 1936 MobiDBLite consensus disorder prediction 1907 1927 - -
Vimu5g01896 1936 MobiDBLite consensus disorder prediction 89 106 - -
Vimu5g01896 1936 Coils Coil 1597 1624 - -
Vimu5g01896 1936 MobiDBLite consensus disorder prediction 61 78 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g01896 Vimu-Chr5 30793584 30803110 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g01896 - - vun:114170579 2387.07
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu5g01896 5 30793584 30803110 Vimu5g01896 5 30793584 30803110 ECH
Vimu4g00647 4 4906314 4928025 Vimu5g01896 5 30793584 30803110 PCT