Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g00647 ATGGTAAATAGTATTCGTTTTAGTGACAGTGCTAAGGATGAAGAAAATAAATATGGGAGAGTCACACAAAATGCTGAGAAGGGAAAAAAACAATTACATCCTACTGTATCAGATGCAGCTACTCTCAGACGGTCTCCTAGAGGGAAATCATCAAGGAGTATAAATTCTTATCCTTCAAGTACTAATAAGTCCAGGCAATTTAAAAAGGGAGCAACACTGATACCGGTGGGTAAAAAGAGATCTGAATTGGTTGGAAAAAAGAACATGCCAAGTCCATTGAGAAGATCTGGAAGGACTGGGAGTTACGCTTCTACTAGTCATTCTGATTCTAAAAGCTCAGGTTCATTGAATTCAAACCCTAAGCCAAAAAAAGAGAAGAGTGTGATACAGTTGACATTTGAAGCCAAAGAAGTAAAGGAAAATGAGGAACAAGATCTTGGAACACCGCAGGTTAAAGTAAGGCGAATGACTGCCCATATGTACCGGTCTCTCTTTGAATTGCCAAAAGAAGTGCATGATAGGATTGACAAGTCAAATCAATGTGCCAACAACATTCGAGATAAAATTGTCCAGTGCTTTGAAGGTTGTCATTCTGATTGTGAAGTCTCCAAGAATGGTGCACTACCATCTAAAGATGGAAAGCTAAAAGAGATGAGAATTAGCTCTAGGTTGAGTGGCCCTGTGAAAGATCCGGTTGATAATACCGTAACTCTGGATTCATTGGCACCATCTAATGCTGCAACTTATGAGGCAGGTTTGACATCTGAAAGGATATTGTATGAAGATTGTATCAGGAACACTGTTAAAGATGATGGAGGTAAAAAACCGATACCTTCTGAGAGCATGGAAATCACTGTGGGTGTGGATACAGATGTTTCTGCCACCTTGGCAAAGGGCGACAACTTCAACGTGATTTCTGATTCTGGTGGCCTGTCAATGATCAGTTGCAAAATTATGGGGACTAACAGTCCATCTAATGCCACAGTTTTTGAGACTGGTTTGGTATCTGAAAAGGTTCAGCCTGATCACCACAGAGAAGAAACATTTCCATCAAGCAATTCCAAGAATGGTGTGCAACTACCTCGAGATGGAAAATCAAAAGAGATGATAGTTGACCATGGGCTGAGTGATCCAATGAAAGACCTAGTTGAAAATATAGTGTCTCTAGGATTGTCAGCACCATCTGATGCCGCGACTTTTGGGACTGGTTTGGTGCCTGAAAGCATTCAGCCTAAAGACTTAATCGGAAATAGTGTTGGGTATGATAGTAGTGGTGACAAATTGGTACCTTCTAAAAGAAAGGGAATTATGGTAGACATGGATTCAGATGTTTCTACCACATTGGCTAAGGGTAACAACTGCAACTTTGTTCCTAGTTGCAGTAGCCCTTCGGTTCTAGCTGGCGATATAATGGGGACTGATGGTTCACATTCCAAGCGGATAAGTGTTGGGTATTCTTACCACTTACTACATATGGCTGATTTCTGCTTGGAAACAAGTCATATGCAGCTGTTGGATGATAATCCTGTAGTCAGTGAGTCTTGTAACCCTTCTACTACCGAGCTTGAAGATGGGGATTCTATTGCTGCAAGCATGCTGCAGGACTCTCAAATTGATAATGAAAAAGAAGTTGGTTTAATAACTAATTCCATGAAGAGTGTCACTCAACTGAAGGAGAGGCTGTCAAGTCATAATCCATACAGATGCAAGTCTGACTCCTTTAGGTTTGTTGAGTATTGGGTTCCTGTACAAATATCTAATCTGCAGCTTGAACAGTATTGTTCTATTTTACTGTCAAATGCTTCTATTCTGCGCTCCTCATCAAAGGTTGATAGCGTTGAGGCTGTCCATGATGTTCTTATATTAACTCGGAAGTGCTGTAGTCATCCCTATCTTGTTGGTCCAGAATTGAAACCTTCTCTTAACAAGGGTCTCAAACCGACTGAGTATCTTGATTTTGATTTAAAAGCAAGTGGCAAGTTGCAACTTCTTGATTCAATGCTTGAGGAGTTGAGAAAAAAGGATTTAAGGGTGCTCATTCTTTTTCAGTCTATTGGAGGTTCTGGAAGAGTTATAGGAAATTATTTGGAAGACCTACTTCGACAAAGATTTGGTCCAGATTCGTATGAACGAATTGATAAAAATATTCTACCTTCCAAGAGACAAGCTGCCATGAAGAAATTTAATGATAAGAACAACAAACGATTTGTGTTTTTGTTAGAAACATGTGCTTGCCTTCCAAGCATTAAATTGTCGTCTGTTGATTCTGTTATTATATTTGATAGTGATTGGAACCCAATGAATGATATAAGGTCCCTTCAGAAAATAACACTCGATTCACAGTTTGAATTCATAAAAATATTCCGGTTATATTCAACTTTCACTGTTGAAGAAAAAGCCTTAATCCTTGCTAAGCAATGTAAGTCAATAATTGACTTCAATTTACAAAACATAAACTGGAGTACCAGTCATATGCTGTTGATGTGGGGTGCTTCTTGTCTATTTAATGAACTCAAAGCTTTTCATGATGGTGAAACTTCTGCATCAAATGTGAAATCCTTGTTTGGGCGACCATTTCTAAAAGAAGCAATGCATGAATTCTCATCTCTACTATCTCAGGATGGAGAACATATTGATTCAAGCAACAGTTCAATCTTATTGAAAGTGCAGCAAAATGGGGGAACATACCACGGAAATTTTTCTTTGCATGGGGAGCTAAAACTTGGGTCACTGGATGAAGAGCCGTCCCAATTTTTTTGGACAAAACTTTTGGATGGAAAACAGTTTCAGTGGAAGTATTTAAATAATTCATCTCAGCGGAGCAGGAAGAAAGTTCATCATTTTGAGAGTTCAGTCCATGGGCCTGATATTGTAAGTGAAGGAGCAGCAAAGAAGCGCAGGAAAGTTAATATTGTTGATCTGCCTTCAAAATTTGAAGATGGAAAGTTACCCGCTGGTAGCAAGGCAGGAACACCTGGAGATTTAGTGGGTAATGCTTCTCAATTCTTGCATGGTCTGACTACTTGTTCTGATAGATCTCAAGGAGACAATTCTGAATCTGAGCGAAAAAGCGGACTGCATGATGAGCAGAGTAGCTTACATATTTTGCTGAAGCCAGAGATCACAAAGCTTTGTGATTTACTTCTTCTTCCGGATAAACTCAAGAGTGTGATCGATAAATTTCTTGAATATGTGATGAATAACCATGATGTCAACAGGGAACCATTTTCAATATTACAGGCTTTTCAATTATCTCTGGGATGGCATTGCATTGCAGCCGCTTTCGACATTGTGGACATTGTGGAATCGCCATGCCATGATGCAAATCACACCTGTTGGACTGCAGCTTCTTTGCTAAAGCACAAACTCAACCCCATTGCCTCTCTTATAAAAGATTTGAACTTTGAGTGTAAGAAAGAAGAGGTGGACTACATTTATTCTATGCTGCGTTGTTTGAAGAAAATATTTTCATATCGTACAGGAAGTTACAATGATACGGACTCTCCAAACGCATCCAAACCATCAGATGGGGTATGTACCAGAGTTGAACAGGAGGTTGAATTGTTCAAAACAGATACTTGTAAAAGTATTAAAGAAATTAAGAAGAAGTGCAAAAAGAAACTGAAGAAGCTATGCCTTTTGCAAGATGAAGAGAAGCAAAGGTTGAAGGCAAATATTGAGGAGGAGGAAGCTAAATTTGAGGAAGGGTACAAACTCCAGTCAGCCGTTATACGGTCCTGCTCTCCCAATGATGTTATCAGAATTGAAAAACTTAGGGTTTTGAATCTTGAATATGAAAAAGGAATTGGAGAGCTAAAATGTCAGCATGAAACACAACTCAAGGATCTTGAGGCCAAGCAATCAGCTGACAAACAGAAGTTTCTAGAAAAGGAGGCTGCTTGGGTAGAAGATGTGGAATCTTGGGCACAAAATGAACTTTCTAAAATAGTTGCTTCAAAGGAACTTGGGACTGGGGTTGAGTCCTTCCAGACATATGGTCGAGCACAACCTGACAATGTTTTTAAGAATCACTTTGCAGAGGGAAAGGGTCAAGATGATAAGGTTAAAGCCATCACAGAGACTGTCACCGAGAATTCACCTTTATCTGATGAAAGAATTGCTAACAGGGCTGCAGTAAGTTTGTCGTGTAGAAAGGAACATTTGGAACAGCATGGGATTATCAATACTAAAGATTCAACAGAAAATGATGGTGCGGTGAATCCTCCTTCATCCATGGAACATGAATCTGATGGAGGTCCTATAAATGAAGTTTCACACAGAGAATTAAGATTGAGTAATGGTCCTGATAACAATACTCATTCGAGTCCGTGGCATGAAAACTGTGGAGACTCATCTAGCATACTTAATGGACATATTCCAGTTGATGAGCAAGAAACTAGAAATGAACTGGACACTGTTTGTACATTAGTAAGAGATGTACCTCCGGAAACAAGTGGGATGGTCAATTTTACCGAGTGTGTACAGGATGCATCTCCTTTGAATCCCCCGTCATCTATGACTCAAATGTCTGATGATGGTCGACTAGAGGTCCCATGTTTAGATAGGGTTTTATCACCAAGGACTTGTCAAGCTGCTTGTTCAGGTGATGAAGGTCCAAATAATATATCCATTTCAAATCCAGTTTTGGAGCAACAAACTGCTGATGATGTTCCTTTGAGTATTCCAGCAGCGGCTGATTGTGTTGATGATATAGAGGATTTAACAGGTGCTGTGTTGGTGGCTAAAAGGACCGCATCAGAAGAGCAGGAAGGAGCACCTAAAACCATGGCAGACTTGTCCCAAGAGTCTCCAGTATCCAGAACATTTAGTGTCATGGATCTTCGAGAAAAAGTTGTGCAGTTATCTATGGGCTCCACTCCTGACCATGAAAAGTTTAAGGAATTGCTGCATTCTTCCGAACAATCAGAACTGGTACCTAGTACAGTTGATGCTGTACCAGCCGATCAGGTGCAACAATCATTATCTGCGGAGCTTCCGTCTTCCCACCTGAATTCAACTTTGTTTCCAAATCAAGATGTGCATTCTGACTCAAACTTGGAACATTCACATGGGCACCCTGCCTCATATTCAGACCCTAATACAGTTGCACCTAGTGAAGTAAGAATACAATCTACAAACACAAATTCTTCAATTCCTCTGGAGATCAATTATCAACATATGAGCTATTATGATCCACTCAAAATTGAATTGGATAGAATACGAAAAGTAGCAGATCAAACAATGATAATCTATGAAAAAAAGAATATGGATTTGAAATCTGAGTTTAAAAAGGAATTAGAAGAACTCCGCAGGAAGTACGATATTAAAATTCAAGGGATTGAAACTGAATTCAAACAAAGAAAGACGACTCTGGATACAAGTCTTAATGTAGTTCGTATGAATAAGTTTTTGGCAGATGCTTTTAGGGCTAAATGCTCACATCTTAAACCATCGCTTACATCAGGAACGCTGCAAGATTCAAGTTTTGCGTCACAACAATTGCTTTCGCCCTCACAACAACCGAATGCTAATTGGCCATCTCTTGTTGCCGGTTCTTCTTTTGGTCCTTCTGCGACCAATCGGCAAGGTCCCTCCACAAGTGCTAGCTCTCAGCTCACGTTACATCCTATACGGGCTGGTTACAGTTCATCACGATTTCCCACCAATGTTTCTGCTGCAAGATCACCAATTATCAACACCATCTCTTTGCCTGTCGAAAATCTTCAACCTGGTGGTGAGATTCGCGCCCCTGCGCCGCATCTCCAGCCTTTTAGACCGTGA 5781 0.4006 MVNSIRFSDSAKDEENKYGRVTQNAEKGKKQLHPTVSDAATLRRSPRGKSSRSINSYPSSTNKSRQFKKGATLIPVGKKRSELVGKKNMPSPLRRSGRTGSYASTSHSDSKSSGSLNSNPKPKKEKSVIQLTFEAKEVKENEEQDLGTPQVKVRRMTAHMYRSLFELPKEVHDRIDKSNQCANNIRDKIVQCFEGCHSDCEVSKNGALPSKDGKLKEMRISSRLSGPVKDPVDNTVTLDSLAPSNAATYEAGLTSERILYEDCIRNTVKDDGGKKPIPSESMEITVGVDTDVSATLAKGDNFNVISDSGGLSMISCKIMGTNSPSNATVFETGLVSEKVQPDHHREETFPSSNSKNGVQLPRDGKSKEMIVDHGLSDPMKDLVENIVSLGLSAPSDAATFGTGLVPESIQPKDLIGNSVGYDSSGDKLVPSKRKGIMVDMDSDVSTTLAKGNNCNFVPSCSSPSVLAGDIMGTDGSHSKRISVGYSYHLLHMADFCLETSHMQLLDDNPVVSESCNPSTTELEDGDSIAASMLQDSQIDNEKEVGLITNSMKSVTQLKERLSSHNPYRCKSDSFRFVEYWVPVQISNLQLEQYCSILLSNASILRSSSKVDSVEAVHDVLILTRKCCSHPYLVGPELKPSLNKGLKPTEYLDFDLKASGKLQLLDSMLEELRKKDLRVLILFQSIGGSGRVIGNYLEDLLRQRFGPDSYERIDKNILPSKRQAAMKKFNDKNNKRFVFLLETCACLPSIKLSSVDSVIIFDSDWNPMNDIRSLQKITLDSQFEFIKIFRLYSTFTVEEKALILAKQCKSIIDFNLQNINWSTSHMLLMWGASCLFNELKAFHDGETSASNVKSLFGRPFLKEAMHEFSSLLSQDGEHIDSSNSSILLKVQQNGGTYHGNFSLHGELKLGSLDEEPSQFFWTKLLDGKQFQWKYLNNSSQRSRKKVHHFESSVHGPDIVSEGAAKKRRKVNIVDLPSKFEDGKLPAGSKAGTPGDLVGNASQFLHGLTTCSDRSQGDNSESERKSGLHDEQSSLHILLKPEITKLCDLLLLPDKLKSVIDKFLEYVMNNHDVNREPFSILQAFQLSLGWHCIAAAFDIVDIVESPCHDANHTCWTAASLLKHKLNPIASLIKDLNFECKKEEVDYIYSMLRCLKKIFSYRTGSYNDTDSPNASKPSDGVCTRVEQEVELFKTDTCKSIKEIKKKCKKKLKKLCLLQDEEKQRLKANIEEEEAKFEEGYKLQSAVIRSCSPNDVIRIEKLRVLNLEYEKGIGELKCQHETQLKDLEAKQSADKQKFLEKEAAWVEDVESWAQNELSKIVASKELGTGVESFQTYGRAQPDNVFKNHFAEGKGQDDKVKAITETVTENSPLSDERIANRAAVSLSCRKEHLEQHGIINTKDSTENDGAVNPPSSMEHESDGGPINEVSHRELRLSNGPDNNTHSSPWHENCGDSSSILNGHIPVDEQETRNELDTVCTLVRDVPPETSGMVNFTECVQDASPLNPPSSMTQMSDDGRLEVPCLDRVLSPRTCQAACSGDEGPNNISISNPVLEQQTADDVPLSIPAAADCVDDIEDLTGAVLVAKRTASEEQEGAPKTMADLSQESPVSRTFSVMDLREKVVQLSMGSTPDHEKFKELLHSSEQSELVPSTVDAVPADQVQQSLSAELPSSHLNSTLFPNQDVHSDSNLEHSHGHPASYSDPNTVAPSEVRIQSTNTNSSIPLEINYQHMSYYDPLKIELDRIRKVADQTMIIYEKKNMDLKSEFKKELEELRRKYDIKIQGIETEFKQRKTTLDTSLNVVRMNKFLADAFRAKCSHLKPSLTSGTLQDSSFASQQLLSPSQQPNANWPSLVAGSSFGPSATNRQGPSTSASSQLTLHPIRAGYSSSRFPTNVSAARSPIINTISLPVENLQPGGEIRAPAPHLQPFRP 1926
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g00647 1926 Pfam Helicase conserved C-terminal domain 661 770 IPR001650 -
Vimu4g00647 1926 MobiDBLite consensus disorder prediction 1668 1703 - -
Vimu4g00647 1926 MobiDBLite consensus disorder prediction 1584 1604 - -
Vimu4g00647 1926 Gene3D - 576 806 IPR027417 -
Vimu4g00647 1926 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 663 826 IPR001650 -
Vimu4g00647 1926 MobiDBLite consensus disorder prediction 1390 1457 - -
Vimu4g00647 1926 MobiDBLite consensus disorder prediction 8 33 - -
Vimu4g00647 1926 Coils Coil 1763 1783 - -
Vimu4g00647 1926 MobiDBLite consensus disorder prediction 342 362 - -
Vimu4g00647 1926 Gene3D - 1729 1811 - -
Vimu4g00647 1926 MobiDBLite consensus disorder prediction 94 125 - -
Vimu4g00647 1926 MobiDBLite consensus disorder prediction 1689 1703 - -
Vimu4g00647 1926 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 577 820 IPR027417 -
Vimu4g00647 1926 MobiDBLite consensus disorder prediction 1668 1682 - -
Vimu4g00647 1926 MobiDBLite consensus disorder prediction 44 68 - -
Vimu4g00647 1926 MobiDBLite consensus disorder prediction 1 127 - -
Vimu4g00647 1926 MobiDBLite consensus disorder prediction 1431 1457 - -
Vimu4g00647 1926 MobiDBLite consensus disorder prediction 1832 1872 - -
Vimu4g00647 1926 PANTHER HELICASE PROTEIN MOM1 9 1926 IPR039322 GO:0031507
Vimu4g00647 1926 Gene3D - 537 575 IPR038718 -
Vimu4g00647 1926 Coils Coil 1212 1232 - -
Vimu4g00647 1926 CDD SF2_C_SNF 658 770 - -
Vimu4g00647 1926 MobiDBLite consensus disorder prediction 1007 1026 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g00647 Vimu-Chr4 4906314 4928025 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g00647 - - var:108332924 3262.24
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu4g00647 4 4906314 4928025 Vimu4g00647 4 4906314 4928025 ECH
Vimu4g00647 4 4906314 4928025 Vimu5g01896 5 30793584 30803110 PCT