Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g01893 ATGGAAAATCTTATCAAGCAGGCTTTGATTTGCAGTTTATTAACAGCACTTGTTTTGTCATCATGCACAATAACAATGTCTGCAAGTGAGGACGAGTTTACTTATGATGTGAATAGTAAGACAGGACCAGATCACTGGGGAGAACTAAAACCTGAATGGAACCCATGCAAGAAGGGATCCATGCAATCCCCAATTGATTTCTCCAATGATAAGGTTAAAAAAGTAACTAATTTGGAAGAACTTCAAATCAACTATAGACCATCCAAAGCAATTATTAAAAATAGGGGCACTGATATCAAGGTGGAATGGAAAGGGAAGAAAAGCAATATAAAAATTAATGGAACTAAGTATACACTTTTACAGTCTCATTGGCATTCTCCCTCTGAACATGCCATAGATGGCACAAGGTTGGATCTAGAGTTGCACATGGTGCACCAAAGTCCATCAGGACAGTATGCAGTGGTTGGAATAATGTACAGCTCTGGAATAGCAGATCCTTTCTTGTCATCGTTAAAGGAAGTCTTAGAGGCCCTTTCTGATAAAACTGGAGCAGAAAGAGAAGTGGCTGAACTGGATCCTAATGTGGTTATGGAACGCGGAAGCGCAGCATTTTATTACAGATACATTGGTTCTCTCACTACTCCTCCATGCTCGGAGAATGTTATTTGGACCGTCTTCAGACAGGTGAGAGCAGTTTCTCAGGACCAAATCAAATTGCTTCAAGAGGCCGTTGAAGATCATGCAAGTTCCAATGCAAGACCACTGCAGAAATTGAACAACCGCTTAGTGCAGTTTAATGATCCTGGAGTTAAAGATTAG 819 0.4042 MENLIKQALICSLLTALVLSSCTITMSASEDEFTYDVNSKTGPDHWGELKPEWNPCKKGSMQSPIDFSNDKVKKVTNLEELQINYRPSKAIIKNRGTDIKVEWKGKKSNIKINGTKYTLLQSHWHSPSEHAIDGTRLDLELHMVHQSPSGQYAVVGIMYSSGIADPFLSSLKEVLEALSDKTGAEREVAELDPNVVMERGSAAFYYRYIGSLTTPPCSENVIWTVFRQVRAVSQDQIKLLQEAVEDHASSNARPLQKLNNRLVQFNDPGVKD 272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g01893 272 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 22 - -
Vimu5g01893 272 ProSiteProfiles Alpha-carbonic anhydrases profile. 31 267 IPR001148 -
Vimu5g01893 272 Gene3D Alpha carbonic anhydrase 29 269 IPR036398 -
Vimu5g01893 272 PANTHER CARBONIC ANHYDRASE 31 261 IPR023561 GO:0004089|GO:0008270
Vimu5g01893 272 Pfam Eukaryotic-type carbonic anhydrase 42 265 IPR001148 -
Vimu5g01893 272 SUPERFAMILY Carbonic anhydrase 32 263 IPR036398 -
Vimu5g01893 272 CDD alpha_CA_prokaryotic_like 42 265 IPR041891 -
Vimu5g01893 272 SMART Carb_anhydrase_2a 35 265 IPR001148 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g01893 Vimu-Chr5 30785180 30787891 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g01893 K01674 - gmx:100811978 330.872
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu4g00649 4 4955998 4959916 Vimu5g01893 5 30785180 30787891 PCT