Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g01849 ATGGTTGTTCCTGTTCTCTTCCTTCTTGTACTCTCATGTATGATTTATTCTAGTTATGCTCAAGGACCACCTTCACCTGGCTACTACCCCAGTTCCAAAATTAGTCCTATTAGCTTCAATCAAGGCTTTAAAAACCTTTGGGGACCTCAGCATCAGAGAATAGACCAAGGCTCATTGACAATATGGCTAGACACTAGCACAGGGAGTGGATTCAAGTCACTTCACTCTTACAAGTCTGGATACTTTGGTGCTGCAATTAAGCTTCATCCTGGTTACACTGCAGGACTTTCAAACAACCAAGACCACCCCGGAAACCACGATGAAATTGACATAGAGTTCCTTGGTACCACGCCGGACAAGCCATATGTCTTGCAGACAAATGTATACATCAGAGGAAGTGGAGATGGGAATATTATAGGAAGAGAAATGAGATTTTTTGTGGATGATGTCCCAATAAGAAGGTATCCAAGGAAAAGTGAGGCCACATATCCTACAAGGCCAATGTATGTGTATGGGTCAATATGGGATGCATCTTCATGGGCAACAGAGGGTGGAAAATACAAAGCTGATTACAGATACCAACCCTTCATTGGTAGGTACAAAAACTTCAAACTTCAAGGTTGCACCAGTGAAAGCTCTGCCTCATGCCACCCACCTTCTGCATCTCCTTCTGGCTTTGGAAGTCTGAGCCCTCAGCAGTTCAGGGCCATGCAATGGGTCCAAACCAACTACATGGTGTACAACTATTGCCATGATCCTAGGAGAGACCACAATCTGATCCCAGAATGCTAA 792 0.4419 MVVPVLFLLVLSCMIYSSYAQGPPSPGYYPSSKISPISFNQGFKNLWGPQHQRIDQGSLTIWLDTSTGSGFKSLHSYKSGYFGAAIKLHPGYTAGLSNNQDHPGNHDEIDIEFLGTTPDKPYVLQTNVYIRGSGDGNIIGREMRFFVDDVPIRRYPRKSEATYPTRPMYVYGSIWDASSWATEGGKYKADYRYQPFIGRYKNFKLQGCTSESSASCHPPSASPSGFGSLSPQQFRAMQWVQTNYMVYNYCHDPRRDHNLIPEC 263
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g01849 263 Pfam Xyloglucan endo-transglycosylase (XET) C-terminus 228 263 IPR010713 GO:0005618|GO:0016762|GO:0044042|GO:0048046
Vimu5g01849 263 Pfam Glycosyl hydrolases family 16 142 192 IPR000757 GO:0004553|GO:0005975
Vimu5g01849 263 Pfam Glycosyl hydrolases family 16 40 135 IPR000757 GO:0004553|GO:0005975
Vimu5g01849 263 PANTHER XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE PROTEIN 8-RELATED 38 145 IPR044791 GO:0004553
Vimu5g01849 263 Gene3D - 144 263 - -
Vimu5g01849 263 Gene3D - 18 143 - -
Vimu5g01849 263 ProSiteProfiles Glycosyl hydrolases family 16 (GH16) domain profile. 18 200 IPR000757 GO:0004553|GO:0005975
Vimu5g01849 263 SUPERFAMILY Concanavalin A-like lectins/glucanases 38 263 IPR013320 -
Vimu5g01849 263 PIRSF EndGlu_transf 139 263 IPR016455 GO:0010411|GO:0016762|GO:0042546
Vimu5g01849 263 PIRSF EndGlu_transf 2 145 IPR016455 GO:0010411|GO:0016762|GO:0042546
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g01849 Vimu-Chr5 30373046 30374468 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g01849 1 263 Glycoside Hydrolase AT3G44990 59.044 4.77e-119 340
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g01849 K08235 - gmx:100781528 458.759
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu4g00685 4 5286550 5287038 Vimu5g01849 5 30373046 30374468 PCT