Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g00685 ATGAAAATTGGGAATAATGTATGCAGCTTTTTGGTGGATGATGTTCCAATAAGAAGGTATCCTAGGAAGAGTGATGCCACGTTCCCCGCAAGAGAAATGCATGTGTACGGATCCATATGGGATGCTTCTTCATGGGCTACAGAGGGTGGAAAATACAAAGCTGATTATAAATACCAACCCTTCATTGGTCAATACAAAAATTTCAAACTTGAAGGTTGCACCACTGAAGCCTCCACCTCATGCCAGCCACCTTCAGCCTCACCATTAGGGTATGGAAGCCTGAGCCCTCAGCAACTTGCTGCAATGCAATGGGTCCAAAACAACCACTTGGTCTATGACTATTGCCATGATCCTGGGAGAGACCACACCCTTACTCCAGAATGTTAA 387 0.4496 MKIGNNVCSFLVDDVPIRRYPRKSDATFPAREMHVYGSIWDASSWATEGGKYKADYKYQPFIGQYKNFKLEGCTTEASTSCQPPSASPLGYGSLSPQQLAAMQWVQNNHLVYDYCHDPGRDHTLTPEC 128
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g00685 128 PANTHER XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE PROTEIN 8-RELATED 9 128 IPR044791 GO:0004553
Vimu4g00685 128 Pfam Glycosyl hydrolases family 16 8 57 IPR000757 GO:0004553|GO:0005975
Vimu4g00685 128 Pfam Xyloglucan endo-transglycosylase (XET) C-terminus 91 128 IPR010713 GO:0005618|GO:0016762|GO:0044042|GO:0048046
Vimu4g00685 128 SUPERFAMILY Concanavalin A-like lectins/glucanases 8 128 IPR013320 -
Vimu4g00685 128 Gene3D - 2 128 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g00685 Vimu-Chr4 5286550 5287038 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu4g00685 6 128 Glycoside Hydrolase AT3G44990 65.041 7.36e-50 159
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g00685 K08235 - gmx:100796768 241.121
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu4g00685 4 5286550 5287038 Vimu4g00685 4 5286550 5287038 ECH
Vimu4g00685 4 5286550 5287038 Vimu5g01849 5 30373046 30374468 PCT