Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g01817 ATGGAAGCGGTGGCCGCAGTTTTTCTATTCGCCACCGCACTTCTGTCGGTGGTGGAGGGGTCGCCGGTGACTCTGACACTGGAAAGAGCGTTTCCTTCGAATCATGGCGTAGAGTTGAGTCAGCTCAGAGCGCGGGACAGCCTCAGACATCGTAGAATGTTGCAGTCTACTAACTATGTCGTAGATTTCCCTGTCAAAGGCACCTTCGATCCCTCAGAAGTCGGGCTTTACTATACCAAGGTAAAAATGGGTACTCCTCCAAGGGAATTTTATGTTCAGATTGACACTGGGAGTGATGTTCTCTGGATTCAGCTCAATTACTTTGACCCTAGGAGTTCATCAACATCTTCATTGATCTCTTGTTCTGACCGGAGGTGCAGGAACGGAGTTCAGTCCTCCGATGCAAGCTGTTCCAGTCAGAACAACCAGTGCATTTACACGTTTCAGTATGGAGATGGCAGTGGGACGTCAGGCTATTATGTGTCCGACTTGATGCATTTTGCTAGTATTTTTGAGGGAACCTTGACAACAAATGCTTCTGCATCTGTAGTTTTTGGTTGTAGCATCCAGCAGACTGGGGACTTAACAAAGTCTGATAGAGCAGTTGATGGGATATTTGGATTCGGGCAACAAGGCATGTCTGTCATTTCGCAACTCTCATCGCAAGGAATTGCACCGAGAGTGTTCTCTCATTGCTTAAAAGGAGATAACAATGGTGGAGGTATCTTGGTTCTTGGTGAAATTGTGGAGCCAAACATAGTTTATACTCCACTTGTTCCATCGCAAACTATGGGATGGATGGAATGCTTTCAATGTTCTTGGGTGCCTGCTCTTGGAAAGGTGCCTTGTGTGAGGTCGAAGAATTTTCATTCAGGGGTTACTGGTTGGTCAAGTGGTCCTATATACTTGGTGAAAATGGTGGTTAGATCTCCTAACTGCTTCCTTGGCAAATATTTCAGGCCTCATTACAATTTATATCTGCAGAGCATCTCTGTCAATGGCCAGTTTTTGCAAATTAACCCTGCAGTTTTTGCTACATCAAGCAACAGAGGTACCATTGTTGATTCTGGAACAACTTTGTCCTACCTTGCAGAAGAGGCTTATACAACCTTTGTGAATGCGATTACAGCTGCTATTCCACAATCTGTACGCAGTGTTCTTTCCAGGGGAAATCAGTGTTACTTAATAACCACCTCCAGCAATGTCGACATGTTTCCACAAGTAAGTCTGAACTTCGCTGGTGGTGCATCTCTGGTTTTAAGACCACTGGACTACCTTATTCAACAGAATTATATTGGTGAGGGTTCAGTTTGGTGTATTGGCTTTCAGAAAATCCCGGGTCAAAGTGTAACTATTCTAGGAGGTATAGTGCTGGTTTGGAAACTTTAG 1389 0.4478 MEAVAAVFLFATALLSVVEGSPVTLTLERAFPSNHGVELSQLRARDSLRHRRMLQSTNYVVDFPVKGTFDPSEVGLYYTKVKMGTPPREFYVQIDTGSDVLWIQLNYFDPRSSSTSSLISCSDRRCRNGVQSSDASCSSQNNQCIYTFQYGDGSGTSGYYVSDLMHFASIFEGTLTTNASASVVFGCSIQQTGDLTKSDRAVDGIFGFGQQGMSVISQLSSQGIAPRVFSHCLKGDNNGGGILVLGEIVEPNIVYTPLVPSQTMGWMECFQCSWVPALGKVPCVRSKNFHSGVTGWSSGPIYLVKMVVRSPNCFLGKYFRPHYNLYLQSISVNGQFLQINPAVFATSSNRGTIVDSGTTLSYLAEEAYTTFVNAITAAIPQSVRSVLSRGNQCYLITTSSNVDMFPQVSLNFAGGASLVLRPLDYLIQQNYIGEGSVWCIGFQKIPGQSVTILGGIVLVWKL 462
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g01817 462 ProSiteProfiles Peptidase family A1 domain profile. 77 462 IPR033121 -
Vimu5g01817 462 CDD pepsin_A_like_plant 77 458 IPR034161 -
Vimu5g01817 462 Pfam Xylanase inhibitor N-terminal 77 246 IPR032861 -
Vimu5g01817 462 SUPERFAMILY Acid proteases 74 458 IPR021109 -
Vimu5g01817 462 PRINTS Pepsin (A1) aspartic protease family signature 352 363 IPR001461 GO:0004190|GO:0006508
Vimu5g01817 462 PRINTS Pepsin (A1) aspartic protease family signature 83 103 IPR001461 GO:0004190|GO:0006508
Vimu5g01817 462 Gene3D Acid Proteases 60 246 IPR021109 -
Vimu5g01817 462 Gene3D Acid Proteases 303 462 IPR021109 -
Vimu5g01817 462 PANTHER ASPARTYL PROTEASES 19 457 IPR001461 GO:0004190|GO:0006508
Vimu5g01817 462 Pfam Xylanase inhibitor C-terminal 322 459 IPR032799 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g01817 Vimu-Chr5 30041395 30044703 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g01817 51 259 Miscellaneous Gene Families AT1G44130 28.959 1.12e-20 92.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g01817 - - thj:104810886 503.442
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu4g00706 4 5519864 5523485 Vimu5g01817 5 30041395 30044703 PCT