Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g00706 ATGGCGGCAGCGGCTCTTGCAATATCCGTGGGGTTGTTGTTGTTGGCGGCGGTTGATGCCGGATCGCCGGTGAGTCTGCCGCTGGAAAGAGCGTTTCCGACGAATCACGGAGTGGAGTTGAGTCAGCTGAGAGCTCGCGATGCGCTGAGGCATCGCAGAATGTTGCAGTCTTCAAACGGCGTCGTTGATTTCCCCGTCCAAGGCACCTACGATCCCTTCCAATTGAATCAATTTCAGAGGCTTTTGGATTTGTGTTGGATTCTGAATAAGTACTTTTCACATCGAATTGATGTGTTACTACTTTTGATTAATCTGCTTTACTTTACAAAGGTACAGTTGGGTACTCCTCCAGTGGAGTTTTATGTGCAGATTGACACTGGCAGTGATGTTCTCTGGGTTAGTTGTAACTCCTGCAGCGGTTGTCCACAGACAAGTGGGCTTCAGATTCAGCTAAATTTTTTTGACCCGGGGAGTTCCTCGACATCTTCACTGATCGCTTGTTCTGACCAAAGGTGCAACAGTGGCATACAGTCATCAGATGCAAGCTGTTCCAGCCAGAACAACCAGTGCTCATACACATTCCAGTATGGAGATGGCAGTGGGACATCAGGCTATTATGTGTCAGATATGATGCATTTGAACACTATTTTTGAGGGTTCTGTGACCACCAATTCTACAGCGCCTGTAGTTTTTGGTTGTAGCAACCAGCAGAGTGGGGACTTGACAAAGTCTGATAGAGCAGTTGATGGAATATTTGGATTTGGGCAACAGGAAATGTCTGTCATCTCCCAGCTCTCCTCACAGGGGATAGCTCCAAGAGTATTCTCTCATTGTCTGAAAGGAGATAGCAGTGGAGGGGGCATATTGGTTCTTGGTGAGATTGTGGAGCCAAACATAGTTTACACCTCACTTGTTCCAGCACAGCCTCATTACAACTTAAATCTACAGAGCATCTCTGTCAATGGCCAGACGTTGCAAATTGATTCTTCAGTTTTTGCAACATCAAACAACAGAGGTACCATTGTTGATTCTGGAACAACTTTGGCGTATCTTGCTGAAGAGGCTTATGATCCCTTTGTCAATGCGATAACAGCTACAATTCCACAATCTGTACGCACTGTTGTTTCCAGGGGAAATCAGTGTTACTTACTCACCACTAGTGTCACTGACGTTTTTCCTCAAGTAAGTCTGAACTTTGCCGGTGGGGCATCTATGCTTTTAAGACCACAGGACTACCTGATACAGCAGAATTCTATTGGTGGTGCAGCAGTGTGGTGTATTGGTTTTCAAAAACTCCAGGGTCAAGGAGTAACAATTCTAGGAGCTTCTGATGCTGTTCTTTTGGAATTCAACAACGTAGGTTCTTTGTCAGTGAATGTCTCTGCAACAACTGGCACCGGCAGAAGTGAATTTGTGAATGCTGGAGAGGTAGGTGGAAGCATTTCTTTACGCGATGGTCTTAAGTTGACAAAGACAGGGTTCTTGGCTTTCCTTGTGCATCTAACACTGATTTACTGCTTTGGATTCTTATAG 1533 0.4553 MAAAALAISVGLLLLAAVDAGSPVSLPLERAFPTNHGVELSQLRARDALRHRRMLQSSNGVVDFPVQGTYDPFQLNQFQRLLDLCWILNKYFSHRIDVLLLLINLLYFTKVQLGTPPVEFYVQIDTGSDVLWVSCNSCSGCPQTSGLQIQLNFFDPGSSSTSSLIACSDQRCNSGIQSSDASCSSQNNQCSYTFQYGDGSGTSGYYVSDMMHLNTIFEGSVTTNSTAPVVFGCSNQQSGDLTKSDRAVDGIFGFGQQEMSVISQLSSQGIAPRVFSHCLKGDSSGGGILVLGEIVEPNIVYTSLVPAQPHYNLNLQSISVNGQTLQIDSSVFATSNNRGTIVDSGTTLAYLAEEAYDPFVNAITATIPQSVRTVVSRGNQCYLLTTSVTDVFPQVSLNFAGGASMLLRPQDYLIQQNSIGGAAVWCIGFQKLQGQGVTILGASDAVLLEFNNVGSLSVNVSATTGTGRSEFVNAGEVGGSISLRDGLKLTKTGFLAFLVHLTLIYCFGFL 510
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g00706 510 PRINTS Pepsin (A1) aspartic protease family signature 113 133 IPR001461 GO:0004190|GO:0006508
Vimu4g00706 510 PRINTS Pepsin (A1) aspartic protease family signature 340 351 IPR001461 GO:0004190|GO:0006508
Vimu4g00706 510 PANTHER ASPARTYL PROTEASES 21 442 IPR001461 GO:0004190|GO:0006508
Vimu4g00706 510 FunFam Aspartic proteinase-like protein 2 61 293 - -
Vimu4g00706 510 Pfam Xylanase inhibitor C-terminal 310 443 IPR032799 -
Vimu4g00706 510 FunFam Aspartic proteinase-like protein 2 294 451 - -
Vimu4g00706 510 Gene3D Acid Proteases 294 453 IPR021109 -
Vimu4g00706 510 CDD pepsin_A_like_plant 107 441 IPR034161 -
Vimu4g00706 510 Gene3D Acid Proteases 98 293 IPR021109 -
Vimu4g00706 510 ProSiteProfiles Peptidase family A1 domain profile. 107 464 IPR033121 -
Vimu4g00706 510 Pfam Xylanase inhibitor N-terminal 107 292 IPR032861 -
Vimu4g00706 510 SUPERFAMILY Acid proteases 99 442 IPR021109 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g00706 Vimu-Chr4 5519864 5523485 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu4g00706 107 414 Miscellaneous Gene Families AT1G44130 28.173 6.50e-32 125
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g00706 - - gmx:100791299 841.262
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu4g00706 4 5519864 5523485 Vimu4g00706 4 5519864 5523485 ECH
Vimu4g00706 4 5519864 5523485 Vimu5g01817 5 30041395 30044703 PCT