Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g01809 ATGAATCGAAGCAGCACAATGGCGCGAGTGGATCTGGACGGTAACCCCATCAAGCCTATCACGATCTGCATGATCGGTGCCGGTGGGTTCATCGGCTCGCACCTCTGCGAGAAACTCATGCACGAAACCCCTCACACGGTTTTCGCCTTGGACGTTTACAATGACAAGATCAAGCACCTTCTGGAACCCGATTCTCTGCCTTGGGCCGGTCGCATCACCTTCCACCGCCTCAACATCAAACACGATTCTCGCCTCGAAGGTCTCATCAAGATGGCAGATCTCACAATTAATCTGGCTGCGATTTGCACCCCTGCGGATTACAACACGCGCCCGCTCGACACCATTTACAGCAATTTCATCGACGCGCTCCCCGTGGTGAAATACTGTTCGGAGAATAACAAGCGCCTTATCCACTTCTCCACTTGCGAAGTGTACGGGAAAACGATTGGAGCCTTTCTCCCCAAAGATAGTCCTCTTCGCAAGGATCCGGCGTACTTTGTCCTTAAAGAAGACGAATCTCCTTGCATTTTTGGTTCTATTGAAAAGCAGAGGTGGTCTTACGCCTGTGCTAAACAGTTGATTGAGAGGCTGATTTATGCTGAGGGCGCTGAAAATGGCTTGGAATTCACCATTGTTAGGCCTTTTAACTGGATTGGACCTAGAATGGATTTCATTCCTGGCATCGATGGTCCAAGTGAGGGTGTTCCTCGGGTTCTTGCATGCTTTAGCAATAATCTTCTTAGAGGAGAGCCCCTCAAGCTTGTAGACGGTGGACAGTCTCAAAGAACCTTTGTTTACATTAAAGATGCTATTGAGGCTGTCTTGTTGATGATTGAAAATCCTGCCAGAGCTAATGGTCATATATTTAATGTCGGTAACCCAAACAACGAGGTTACTGTTAGGCAGCTTGCTGAAATAATGATTCAGGTTTACTCAAAGGTGAGTGGAGAAAAAACTCCTGAAACCCCAACCATTGATGTGAGCTCAAAAGAATTTTATGGTGAGGGATATGATGACAGTGACAAGAGAATTCCTGACATGACCATAATAAACAAGCAGCTTGGTTGGAATCCTAAGACTTCGCTCTTCGACCTGCTGGAATCCACTCTGACCTATCAGCACAGGACATATGCTGAAGCCATCAAGAAAGTAATTGCAAAACCCGTTGCAAGTTAA 1176 0.4685 MNRSSTMARVDLDGNPIKPITICMIGAGGFIGSHLCEKLMHETPHTVFALDVYNDKIKHLLEPDSLPWAGRITFHRLNIKHDSRLEGLIKMADLTINLAAICTPADYNTRPLDTIYSNFIDALPVVKYCSENNKRLIHFSTCEVYGKTIGAFLPKDSPLRKDPAYFVLKEDESPCIFGSIEKQRWSYACAKQLIERLIYAEGAENGLEFTIVRPFNWIGPRMDFIPGIDGPSEGVPRVLACFSNNLLRGEPLKLVDGGQSQRTFVYIKDAIEAVLLMIENPARANGHIFNVGNPNNEVTVRQLAEIMIQVYSKVSGEKTPETPTIDVSSKEFYGEGYDDSDKRIPDMTIINKQLGWNPKTSLFDLLESTLTYQHRTYAEAIKKVIAKPVAS 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g01809 391 Gene3D - 20 382 - -
Vimu5g01809 391 PANTHER BIFUNCTIONAL POLYMYXIN RESISTANCE PROTEIN ARNA 21 376 - -
Vimu5g01809 391 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 21 374 IPR036291 -
Vimu5g01809 391 CDD Arna_like_SDR_e 21 376 IPR045869 GO:0016831
Vimu5g01809 391 FunFam UDP-D-apiose/UDP-D-xylose synthase 2 20 383 - -
Vimu5g01809 391 Pfam NAD dependent epimerase/dehydratase family 22 292 IPR001509 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g01809 Vimu-Chr5 29953799 29956135 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g01809 K12449 - gmx:102667779 763.066
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu4g00714 4 5585552 5587801 Vimu5g01809 5 29953799 29956135 PCT