Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g00714 ATGGCTTCGGCGCGATTGGATCTGGACGGGAACCCCATAAAGCCAATCACCATCTGCATGATAGGTGCAGGTGGCTTCATCGGGTCCCACCTCTGCGAGAAGCTCATGAACGAAACCCCGCACAAGGTTTTTGCTTTGGATGTTTATAATGACAAGATCAAACACCTTCTGGAACCCGACACGCTCCCCTGGGCTGGTCGCATCCAATTCCACCGCCTCAACATCAAGCACGATTCTCGACTTGAGGGCCTCATCAAGATTGCAGATCTGACCATTAACCTGGCTGCTATATGCACTCCCGCGGATTACAACACGCGCCCTCTCGACACCATTTACAGCAACTTCATCGACGCGCTTCCTGTGGTGAAGTACTGTTCGGAAAACAATAAGCGTCTCATTCACTTCTCTACCTGTGAAGTGTATGGGAAAACGATTGGAAGCTTTCTCCCCAAAGATAGTGCACTTCGTCAGGATCCTGCATACTACGTACTGAAGGAGGATGAGTCTCCTTGTATTTTTGGTTCGATTGAAAAGCAGAGATGGTCATATGCCTGTGCTAAGCAGTTGATTGAGAGGCTGATTTATGCTGAGGGCGCTGAAAATGGATTGGAATTCACAATTGTGAGGCCTTTTAATTGGATTGGACCAAGAATGGATTTCATTCCCGGCATTGATGGACCAAGTGAGGGTGTTCCTCGGGTTCTGGCATGCTTTAGCAATAATCTCCTCCGTGGTGAGCCCCTCAAGCTTGTGGATGGTGGCCAATCCCAGAGAACCTTTGTTTACATTAAGGATGCCATTGAAGCTGTCTTGCTGATGATTGAAAATCCTGCCAGGGCCAATGGACAGATTTTTAATGTGGGTAACCCAAACAACGAGGTTACAGTTAGGCAGCTTGCTGAAATGATGTCTCAGGTTTATTCAAAGGTAAGTGGAGAAGCTCCTCTGGAAAAGCCTACTATTGATGTGAGCTCCAAAGAATTTTATGGCGAGGGATATGATGACAGCGACAAGAGAATTCCTGACATGACCATAATTAATAGGCAACTTGGCTGGAATCCTAAGACCTCACTTTGGGACCTGCTTGAATCAACTCTCACCTATCAGCACAGAACATATGCTGAAGCCATAAAGAAAGTGATTGCAAAGCCCGTGGCAAGTTAA 1164 0.4699 MASARLDLDGNPIKPITICMIGAGGFIGSHLCEKLMNETPHKVFALDVYNDKIKHLLEPDTLPWAGRIQFHRLNIKHDSRLEGLIKIADLTINLAAICTPADYNTRPLDTIYSNFIDALPVVKYCSENNKRLIHFSTCEVYGKTIGSFLPKDSALRQDPAYYVLKEDESPCIFGSIEKQRWSYACAKQLIERLIYAEGAENGLEFTIVRPFNWIGPRMDFIPGIDGPSEGVPRVLACFSNNLLRGEPLKLVDGGQSQRTFVYIKDAIEAVLLMIENPARANGQIFNVGNPNNEVTVRQLAEMMSQVYSKVSGEAPLEKPTIDVSSKEFYGEGYDDSDKRIPDMTIINRQLGWNPKTSLWDLLESTLTYQHRTYAEAIKKVIAKPVAS 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g00714 387 PANTHER BIFUNCTIONAL POLYMYXIN RESISTANCE PROTEIN ARNA 17 372 - -
Vimu4g00714 387 FunFam UDP-D-apiose/UDP-D-xylose synthase 2 16 379 - -
Vimu4g00714 387 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 17 370 IPR036291 -
Vimu4g00714 387 CDD Arna_like_SDR_e 17 372 IPR045869 GO:0016831
Vimu4g00714 387 Gene3D - 16 378 - -
Vimu4g00714 387 Pfam NAD dependent epimerase/dehydratase family 18 288 IPR001509 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g00714 Vimu-Chr4 5585552 5587801 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu4g00714 16 382 Miscellaneous Gene Families AT1G02000 21.337 1.22e-07 51.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g00714 K12449 - gmx:100792879 768.459
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu4g00714 4 5585552 5587801 Vimu4g00714 4 5585552 5587801 ECH
Vimu4g00714 4 5585552 5587801 Vimu5g01809 5 29953799 29956135 PCT