Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g01793 ATGCAGACCCTCACTCCGCCGTGCGCTAACCCTATCAACTATCTCAACCGGCCGTCTCACTCGCTTATTCGGGTCGCTCCGATCCGATTTAGGGTCAAATGCGGTTACGGCTTCGAAACCGCGGGTTTCTCGCAAGGATTCGGCGCGACTCGAGCCGATTGGCAAAGCTCGAATGCCATCTTAGCCAGTAAAATTATGTCGCAGAAGGAGGATTCTCCCGCCGGTGACAACAACCCTGCCGCCGTGAACGGCAATAACGCTGCTGTAACGAATCTAAATATCGTACCTGTCAAACACGACGGCGGCAACAGCAAGCCGCTTCCTCCGAAGCCGCTCTCGATCACCGACCTCTCCCCCGCACCGATGCACGGCTCGCAGCTGCGCGTGGCGTACCAAGGCGTTCCCGGAGCGTACTCCGAGGCCGCAGCGGGAAAAGCGTATCCTAACGGGGAAGCCATACCGTGCGACCAGTTCGAGGTGGCTTTCCAGGCGGTGGAGCTCTGGATCGCGGATCGCGCGGTGCTGCCGGTTGAAAACTCCCTCGGCGGCTCGATACACCGGAACTACGACCTCCTTCTCCGCCACCGCCTCCACATCGTCGGCGAGGTCCAGCTCCCGGTGCACCACTGCCTCCTGGCACTCCCCGGCGTCCGCAAGGAGTTCCTCACGCGCGTGATCTCGCATCCGCAGGCCTTAGCGCAGTGCGAGCACTCACTCACGAAACTCGGCCTCAACGTGGCGCGTGAGGCAGTCGACGACACTGCAGGCGCCGCGGAGTTCGTCGCGGCAAACAGCCTCCGCGACACGGCGGCAATCGCGAGTGCCCGCGCCGCAGAGCTCTACGGTTTGCAGGTCCTCGCAGACGGAATCCAAGACGATCCGAACAACGTGACACGGTTCGTGATGCTGGCGCGCGAACCGATAATTCCGCGCACGGATCGGCCATTCAAGACAAGCATCGTGTTCGCTCACGATAAGGGAACCTCTGTGCTTTTTAAAGTGCTTTCAGCGTTCGCGTTTAGAAACATTAGCTTGACGAAGATCGAGTCCAGGCCTCACCGTAGCCGTCCGATTCGTGTTGTCGATGATGAGAGCGAAGGAACCGCCAAACACTTCGAGTATTTGTTTTACATCGATTTTGAGGCTTCTATGGCGGAAGTTAGGGCTCAGAACGCCCTCGCTGAGGTTCAAGAATTCACCTCTTTCCTCCGAGTCTTGGGCAGTTACCCTATAGATATGACACCCTGGAACCCTTCTTGTCCCCGAGAATATTAA 1275 0.5851 MQTLTPPCANPINYLNRPSHSLIRVAPIRFRVKCGYGFETAGFSQGFGATRADWQSSNAILASKIMSQKEDSPAGDNNPAAVNGNNAAVTNLNIVPVKHDGGNSKPLPPKPLSITDLSPAPMHGSQLRVAYQGVPGAYSEAAAGKAYPNGEAIPCDQFEVAFQAVELWIADRAVLPVENSLGGSIHRNYDLLLRHRLHIVGEVQLPVHHCLLALPGVRKEFLTRVISHPQALAQCEHSLTKLGLNVAREAVDDTAGAAEFVAANSLRDTAAIASARAAELYGLQVLADGIQDDPNNVTRFVMLAREPIIPRTDRPFKTSIVFAHDKGTSVLFKVLSAFAFRNISLTKIESRPHRSRPIRVVDDESEGTAKHFEYLFYIDFEASMAEVRAQNALAEVQEFTSFLRVLGSYPIDMTPWNPSCPREY 424
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g01793 424 Gene3D - 123 211 - -
Vimu5g01793 424 ProSiteProfiles Prephenate dehydratase domain profile. 128 305 IPR001086 GO:0004664|GO:0009094
Vimu5g01793 424 FunFam Arogenate dehydratase 312 413 - -
Vimu5g01793 424 Pfam Prephenate dehydratase 129 307 IPR001086 GO:0004664|GO:0009094
Vimu5g01793 424 ProSiteProfiles ACT domain profile. 319 410 IPR002912 -
Vimu5g01793 424 PANTHER PREPHENATE DEHYDRATASE P PROTEIN 46 418 - -
Vimu5g01793 424 SUPERFAMILY ACT-like 300 411 IPR045865 -
Vimu5g01793 424 SUPERFAMILY Periplasmic binding protein-like II 128 311 - -
Vimu5g01793 424 CDD ACT_CM-PDT 317 410 - -
Vimu5g01793 424 ProSitePatterns Prephenate dehydratase signature 1. 281 303 IPR018528 GO:0004664|GO:0009094
Vimu5g01793 424 Gene3D - 312 413 - -
Vimu5g01793 424 FunFam Arogenate dehydratase 211 293 - -
Vimu5g01793 424 FunFam Arogenate dehydratase 123 210 - -
Vimu5g01793 424 Gene3D - 212 293 - -
Vimu5g01793 424 CDD PBP2_Ct-PDT_like 128 307 - -
Vimu5g01793 424 ProSitePatterns Prephenate dehydratase signature 2. 345 352 IPR018528 GO:0004664|GO:0009094
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g01793 Vimu-Chr5 29710465 29714119 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g01793 K05359 - gmx:100809331 741.11
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu4g00735 4 5758137 5759414 Vimu5g01793 5 29710465 29714119 PCT