Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g00735 ATGCAGACTCTTTCGCCCCCAACTTCCAACGCGCTTAACCTCAACCACGTTCTACGCACGCGCCGCCTCCTACCAACCCGACTCTCCGTCAAATGCGCTTACGCGTTCGAACCGGCGAGCTACGGGGTCGGCTCGAGCCGAGCCGATTGGCAGAGCACTTGCGCCATCTTAGCAAGCAAGGTCGTTTCTCAGGAACAAACCTCCTCAGCTGACAAGAACGGTGGCACTGCCGACCATGTCGCCGCCGTTAACGGCCACAAGGCAGCCGTCAGCGACTTCCAACTCGTTCCCATCGGAAACCTTGCCGAGGCCAACAACAAGCCGCTCCCGCCGAAGCCGCTTACAATCTCTGACCTCTCCCCTGCGCCGATGCACGGCTCGAAGCTCAGAGTCGCTTACCAGGGAGTTCCCGGCGCGTACTCTGAGGCTGCAGCAGGGAAAGCCTATCCGAACTGCGAGGCCATCCCGTGCGACCAGTTCGAGGTGGCGTTCCAGGCTGTGGAGCTTTGGATCGCCGATCGAGCGGTTTTACCGGTGGAAAACTCCCTCGGAGGCTCGATCCACCGCAACTACGACCTCCTCCTTCGCCACCGCCTCCATATCGTCGGCGAGGTGCAGCTCCCGGTCCACCACTGCCTCCTCGCCCTCCCCGGCGTTCGCAAGGAGTTCCTCACGCGCGTAATCTCGCATCCGCAGGCGCTCTCTCAGTGCGAGCACACGCTCACCAAACTCGGCCTCAACGTGGCGCGAGAGGCCGTAGACGATACCGCCGGCGCCGCCGAGTTCGTAGCCGCAAACAACCTCCGCGACACCGCCGCCATCGCGAGCGCGCGGGCGGCGGAGCTCTACGGCCTGAACGTGATGGCAGACGGCATCCAGGACGATCCAAGCAACGTGACGCGCTTCGTGATGCTGGCCAGAGAGCCTATCATCCCCCGCACCGACCGTCCTTTCAAGACGAGCATTGTTTTCGCGCATGACAAAGGCACCTCCGTGCTTTTCAAAGTGCTTTCCGCATTTGCGTTTCGCAACATCAGCTTGACGAAGATCGAGTCGCGGCCGCACCGTAACCGTCCCATTCGGCTTGTCGATGACGCTAACGTGGGAACCGCAAAGCACTTCGAGTACTTGTTCTACGTTGATTTTGAGGCTTCGATGGCTGAAGTGAGGGCTCAAAACGCGCTTGCAGAAGTTCAGGAATTCACCTCCTTCTTGCGAGTGCTCGGAAGTTACCCTATGGACATGACTCCCTGGACCCCTTCCTCCCCTCCACATTGA 1278 0.6056 MQTLSPPTSNALNLNHVLRTRRLLPTRLSVKCAYAFEPASYGVGSSRADWQSTCAILASKVVSQEQTSSADKNGGTADHVAAVNGHKAAVSDFQLVPIGNLAEANNKPLPPKPLTISDLSPAPMHGSKLRVAYQGVPGAYSEAAAGKAYPNCEAIPCDQFEVAFQAVELWIADRAVLPVENSLGGSIHRNYDLLLRHRLHIVGEVQLPVHHCLLALPGVRKEFLTRVISHPQALSQCEHTLTKLGLNVAREAVDDTAGAAEFVAANNLRDTAAIASARAAELYGLNVMADGIQDDPSNVTRFVMLAREPIIPRTDRPFKTSIVFAHDKGTSVLFKVLSAFAFRNISLTKIESRPHRNRPIRLVDDANVGTAKHFEYLFYVDFEASMAEVRAQNALAEVQEFTSFLRVLGSYPMDMTPWTPSSPPH 425
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g00735 425 SUPERFAMILY Periplasmic binding protein-like II 130 313 - -
Vimu4g00735 425 CDD ACT_CM-PDT 319 412 - -
Vimu4g00735 425 ProSitePatterns Prephenate dehydratase signature 2. 347 354 IPR018528 GO:0004664|GO:0009094
Vimu4g00735 425 ProSiteProfiles ACT domain profile. 321 412 IPR002912 -
Vimu4g00735 425 FunFam Arogenate dehydratase 213 295 - -
Vimu4g00735 425 Gene3D - 314 415 - -
Vimu4g00735 425 FunFam Arogenate dehydratase 314 415 - -
Vimu4g00735 425 ProSiteProfiles Prephenate dehydratase domain profile. 130 307 IPR001086 GO:0004664|GO:0009094
Vimu4g00735 425 Gene3D - 214 295 - -
Vimu4g00735 425 Pfam Prephenate dehydratase 131 309 IPR001086 GO:0004664|GO:0009094
Vimu4g00735 425 Gene3D - 125 213 - -
Vimu4g00735 425 CDD PBP2_Ct-PDT_like 128 309 - -
Vimu4g00735 425 PANTHER PREPHENATE DEHYDRATASE P PROTEIN 33 421 - -
Vimu4g00735 425 FunFam Arogenate dehydratase 125 212 - -
Vimu4g00735 425 ProSitePatterns Prephenate dehydratase signature 1. 283 305 IPR018528 GO:0004664|GO:0009094
Vimu4g00735 425 SUPERFAMILY ACT-like 302 414 IPR045865 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g00735 Vimu-Chr4 5758137 5759414 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g00735 K05359 - gmx:100797636 791.956
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu4g00735 4 5758137 5759414 Vimu4g00735 4 5758137 5759414 ECH
Vimu4g00735 4 5758137 5759414 Vimu5g01793 5 29710465 29714119 PCT