Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g01732 ATGGAGTTGGGAAGCATACTGCACTTTCTTCAGGACAAGACCATTTTGATCACTGGAGCCACTGGTTTTCTTGCCAAAGTTTTATTGGAGAAGATATTGAGGGTCCAACCAAATGTTAAGAAGCTCTACCTTCTCTTAAGAGCTGCAGACGCCAAATCTGCAACTCATCGCTTGCACAGTGAGATCATAGCGAAGGATTTGTTTAGGATATTAAAGGAAAAAGTGGGTGTAAATTTTAACTCTTTCATCTCGAAAAAGTTGACTCTGGTGCCTGGGGATATTTCTCGTGAAGATTTAGGAATTGAAGATACCATTCTAAGGGAAGAGATTTATGATCAAACAGATGTCATCATAAATTTAGCTGCAACAACTAACTTTGATGAAAGGTATGATATATCTTTGGGTCTAAATACCTTTGGAGTTAAGTATGTGATCAACTTCGCCAAAAAGTGTGGTAAACTCGAGGTTCTTGTGCATGTATCAACAGCCTATGTATGTGGTGAGGGAGAAGAAGAAGGGCTCATATTAGAGAAACCTTATCATTTGGGTGATTCTCTGAATGGAGTTTCTGGATTAGACATCAATGCAGAAGACAAGGTGGTTCGTGAAAAACTGACCGAGTTACGACAACTGGGGGCCACAGAAACGGAAATTAAAGAGGTTATGAAGGACTTGGGGATTAGCAGGGCAAAGTTGTATGGATGGCCAAACACATACGTATTCACGAAAGCCATGGGAGAGATGCTTGTGGAGCAACTAAAAGGAAACTTATCCGTTGTCATCATTCGCCCTACTATTGTTACCAGCACACTCAAAGAACCTTTCCCTGGTTGGGCAGAAGGTGTAAGAACCATTGACAGTTTAGCAGTAGCTTATGGGAAAGGAAAATTAACATGCTTCCTTGGAGATCTCAAAGCAATTATTGATGCGGTGAGGATACCAGCTGACATGGTGGTGAATGCAATACTTGTGGCTATGGTGGCTCATGCAAATCATCCTAGCGATGACGTTATATATAATGTTGGTTCTTCTGTTAGAAAACCACTGAGATACAGCAATCTTCAAGACTATGGCTTGAGATATTTCACAGCAAAACCATGGATAAACAAGGATGGAAGGCCAGTTAAGGTTGGCAAAGTTACAGTATTGAACAACATGGACAGTTTCAGAAGATATATGTTCATTCGCTACCTCGTTGTGCTGAAGGGACTTGAGCTAGCCAATACTGCATTTTGCCAGTATTTCCAAGGAACATATCTTAATCTCAACAGGAAGATCCAGATCGTGATGCGGTTGGTGGACCTTTACAAGCCCTACTTGTTCTTCAGAGCTGCGTTTGATGATATGAACACAGAGAAGTTGCGAATGGCAGCAAGAGAAGGAGGGGTGGAGAGAGATTTGTTTTACTTTGATCCAGAAGTGATAGATTGGGATGATTACTTTTTGAACATCCACCTTCCTGGTGTTGTGAAGTACATTTTCAAAGTTTCTGAAGGTTGTGTTAGAGTTTGTGAAGAGCAGCAGCTGCTAAATATGTTTCAGAAACTTTGA 1551 0.4101 MELGSILHFLQDKTILITGATGFLAKVLLEKILRVQPNVKKLYLLLRAADAKSATHRLHSEIIAKDLFRILKEKVGVNFNSFISKKLTLVPGDISREDLGIEDTILREEIYDQTDVIINLAATTNFDERYDISLGLNTFGVKYVINFAKKCGKLEVLVHVSTAYVCGEGEEEGLILEKPYHLGDSLNGVSGLDINAEDKVVREKLTELRQLGATETEIKEVMKDLGISRAKLYGWPNTYVFTKAMGEMLVEQLKGNLSVVIIRPTIVTSTLKEPFPGWAEGVRTIDSLAVAYGKGKLTCFLGDLKAIIDAVRIPADMVVNAILVAMVAHANHPSDDVIYNVGSSVRKPLRYSNLQDYGLRYFTAKPWINKDGRPVKVGKVTVLNNMDSFRRYMFIRYLVVLKGLELANTAFCQYFQGTYLNLNRKIQIVMRLVDLYKPYLFFRAAFDDMNTEKLRMAAREGGVERDLFYFDPEVIDWDDYFLNIHLPGVVKYIFKVSEGCVRVCEEQQLLNMFQKL 516
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g01732 516 Gene3D - 8 377 - -
Vimu5g01732 516 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 6 342 IPR036291 -
Vimu5g01732 516 CDD FAR_C 419 494 IPR033640 -
Vimu5g01732 516 Pfam Male sterility protein 397 495 IPR033640 -
Vimu5g01732 516 Pfam Male sterility protein 17 322 IPR013120 -
Vimu5g01732 516 CDD FAR-N_SDR_e 13 366 - -
Vimu5g01732 516 PANTHER MALE STERILITY PROTEIN 2-RELATED 6 495 IPR026055 GO:0080019
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g01732 Vimu-Chr5 29074540 29080057 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g01732 113 494 Acyl Lipid Metabolism Gene Families AT4G33790 60.733 1.82e-177 502
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g01732 K13356 - gmx:100798338 902.508
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu4g00757 4 5923634 5926759 Vimu5g01732 5 29074540 29080057 PCT