Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g00757 ATGGAATTGGGAAGCATAATTCACTTCCTTCAGGATAAGACCATCTTAGTCACTGGTGCCACTGGTTTTCTTGCAAAAAGTCTCTCTCTCCTTCTCCTTCTCTCTTTCTGTTACATTTCTCCTTCTAAGCTTGCTTATGTTGTGCTTCTACTACGTACTGATACTAAGCTATATATATGTATCTGTGCTTCCTTGTATGATTTTGCAGTTTTTGTAGAAAAAATATTGAGGGTTCAACCAAATGTGAAGAAACTTTATCTGCTTTTGAGAGGTAAAGATACTGAATCCGCTACTCAACGCTTAGATAACGAGATCATAGGGAAGGACTTGTTTAGATTGCTGAAGGAAAAACTGGGAACAAGATTCAGTTCCTTTGTCTCAGAAAAGCTCACTGTGGTACCTGGAGACATTTCTCATGAGGACTTGAATTTGAAGAACTCCATTCTGAGGGAAGAAATTTGTAACCAAACAGATGTTATAGTTAATCTAGCTGCAACAACTAACTTCGATGAAAGATACGATGTTGCACTGGGTATAAATACATTAGGAGTTAAACATGTGATGAACTTTGCCAAGAAATGTGTAAAGCTGAAGGTGTTTGTCCACGTATCAACAGCTTATGTATGTGGAGAAAGAGGAGGACTGATACTAGAGGATCCACATCACTTTGGTGTGTCACTAAATGGAGTGAGAGGACTAGACATTGAAATGGAAAAGAAGAAGGTAGAGGAGAAACTCAATGAGCTGAAAGAGGAGGGAGCCACAGAACATGATATTGAATTGGCCATGAAAAACTTGGGAAGTAAAAGAGCAACGATGTATGGATGGCCAAACACGTATGTGTTTACAAAGGCAATGGGAGAAATGATTGTAGGAACTACAAAGGGAAACATGAACGTAGTAATTGTACGTCCCACAATCATTACTAGTACTTACAGAGAACCTTTCCCTGGTTGGATCGAAGGTTTAAGAACCATAGACAGCTTGATTGTTGCTTATGGTAAAGGAAAGTTAACTTGCTTCCTTGCTGATCTTAAGGCTGTTTTTGATGTGATACCAGCAGACATGGTGGTGAATGCAATCCTAGTGAGCATGGTGGCTCATGCAAATCAACCTAGTGACATCATATACCATGTGGGTTCCTCTGTTGCAAATCCAGTTAGGTACCTTAATCTTCGAGACTGCGCCGTGAGATATTTCACGGAAAAACCTTGGATAAACAAGGAAGGAAAGGCCGTAAAGGTTGGCAAAGTTACCATATTGAGCAACATGGATAGCTTCTACAGATATATGTACATTCGTTATCAGCTTCCCTTAAAGGGACTGGAGCTGGTGAATGCAGCTTCGTGCCATTATTTTCAGGAAATTTGTGTGGACTTCAATAGGAAGATCCGCACAATCATGCGATTGGTTGAGCTTTACAAGCCTTACTTGTTCTTCAATGGGATATTTGATGATTTGAACAGAGAAAAGTTGTTGTCAATGGGAAGAGAAGGTGGAGTAGAGACTGAGTTGTTTTACTTTGACCCGAAAATGATTGATTGGGAAGACTATTTCATGAATATCCATTTTCCTGGAATCATAAAGTATGCTTTCAAGTGA 1602 0.3958 MELGSIIHFLQDKTILVTGATGFLAKSLSLLLLLSFCYISPSKLAYVVLLLRTDTKLYICICASLYDFAVFVEKILRVQPNVKKLYLLLRGKDTESATQRLDNEIIGKDLFRLLKEKLGTRFSSFVSEKLTVVPGDISHEDLNLKNSILREEICNQTDVIVNLAATTNFDERYDVALGINTLGVKHVMNFAKKCVKLKVFVHVSTAYVCGERGGLILEDPHHFGVSLNGVRGLDIEMEKKKVEEKLNELKEEGATEHDIELAMKNLGSKRATMYGWPNTYVFTKAMGEMIVGTTKGNMNVVIVRPTIITSTYREPFPGWIEGLRTIDSLIVAYGKGKLTCFLADLKAVFDVIPADMVVNAILVSMVAHANQPSDIIYHVGSSVANPVRYLNLRDCAVRYFTEKPWINKEGKAVKVGKVTILSNMDSFYRYMYIRYQLPLKGLELVNAASCHYFQEICVDFNRKIRTIMRLVELYKPYLFFNGIFDDLNREKLLSMGREGGVETELFYFDPKMIDWEDYFMNIHFPGIIKYAFK 533
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g00757 533 CDD FAR_C 462 532 IPR033640 -
Vimu4g00757 533 Pfam Male sterility protein 435 533 IPR033640 -
Vimu4g00757 533 Coils Coil 232 252 - -
Vimu4g00757 533 Pfam Male sterility protein 70 361 IPR013120 -
Vimu4g00757 533 Gene3D - 8 419 - -
Vimu4g00757 533 PANTHER MALE STERILITY PROTEIN 2-RELATED 6 532 IPR026055 GO:0080019
Vimu4g00757 533 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 12 401 IPR036291 -
Vimu4g00757 533 CDD FAR-N_SDR_e 13 404 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g00757 Vimu-Chr4 5923634 5926759 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu4g00757 153 532 Acyl Lipid Metabolism Gene Families AT4G33790 63.684 1.66e-180 511
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g00757 K13356 - gmx:100789566 816.994
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu4g00757 4 5923634 5926759 Vimu4g00757 4 5923634 5926759 ECH
Vimu4g00757 4 5923634 5926759 Vimu5g01732 5 29074540 29080057 PCT