Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g01728 ATGTCTCAGTTCTTCAAGGGAAAGACCATGTTAATCACTGGCACAACGGGCTTCCTAGCAAAAGTTTTCTTGGAAAAGATTCTAAGAACACAGCCAGAAGTTAAAACGCTATATCTTGTCGTACGAGCAGAAAACATGGATTTGGCTGCAAAACGCTTTCAAAATGAGGTGATTCTCACAGATTTATTTAGAGTGTTACGGGACCAATTGGGTGAAGATTTTGATTCTTTCATTTCGAGCAAGATTGTGGTCATACCAGGAGATGTTTCTCTTAATAACTTTGGTCTGAAAGATGAAAAGCTTAAGAGTAAGATGTTGGAAGAGATCAACGTTGTTGTGAATTTTGCAGCATCTACTAAATTTGACGAAAGATTTGACATCTTAATGGGTGTAAATACAATGGGTGCCTTACATGTCTTAAACTTCGCAAAGAATTGTCGTCAGATAAAGGCTTTTGTGCATACATCAACTGCATATGTGTGTGGAGAGATTAAGGATAGAAAAACAATTGTGCAAGAGAAACCCTTTGAGATGGGTCAGACCCTGAAAGAGACCTCGAAATTAGACATCACTGCAGAAATGAATTTGTTGAAGAAGAAAATCGATGAACTCCGATCAGAGAATGCTACTGAAAACACAATCAGAAATGTAATGAAAGATTACGGAATTGAAAGAGCAAAGTTGTATGGTTGGCCAAACACATACACATTCACAAAAGCAATGGGAGAAATGCAAGTGGTTCATCACAAAGATAATGTTCCACTAATTATTATACGTCCCACCATGGTTACCAGTACCTTTAAGGACCCATTTCCTGGTTGGATTGAAGGCTTAAGAACTCTGGACAGCATAATATGTAGCTATGGTCAAGGGAAAATAACAAGCTTTCTTGGTCATCCCAAGACAATTTTGGATACAATACCTGCGGACATGGTTGTCAATTGTATGATGACAGCAATTGTTGCTTGTTCAAATCAAGCTCCAAAGAATTTCATCTACCACGTTTCTTCATCGTTAAGAAATCCATTCAGAATTGCCGATGTTCGTGATTTCAGCTATCGTTATTTCACTAAATTCCCGATCAGAAACAAAATTGGAAAGCTAATAACAGTTCCCAAGCCAACTTTGATATCAAGTAGGGTTGCCTTCGACATTCTCATGACAGTCCGATATGTTTTGCCACTAAAGGTGTTAAATTTGGTGAACGAAGCGTTTTGTCAATGCTCTCGAGATGTTTACGAGGATAGCTACAAAAAAATCAAAAGGGTGACACGACTAGTTGAACTGTACAAACCATACCTATTTTTTAAGGGCGTCTTCGATGATTCAAACACAGAAAATTTACGAAGAGCAAAAAGTAATAACATGGAGGTTGATGGATTGGACTTTGACCCTAATAGCATCGATTGGGAAGACTACATGATGAACACACACATTCCTGGTCTTGTAAACTATGCATTGAAATGA 1467 0.3804 MSQFFKGKTMLITGTTGFLAKVFLEKILRTQPEVKTLYLVVRAENMDLAAKRFQNEVILTDLFRVLRDQLGEDFDSFISSKIVVIPGDVSLNNFGLKDEKLKSKMLEEINVVVNFAASTKFDERFDILMGVNTMGALHVLNFAKNCRQIKAFVHTSTAYVCGEIKDRKTIVQEKPFEMGQTLKETSKLDITAEMNLLKKKIDELRSENATENTIRNVMKDYGIERAKLYGWPNTYTFTKAMGEMQVVHHKDNVPLIIIRPTMVTSTFKDPFPGWIEGLRTLDSIICSYGQGKITSFLGHPKTILDTIPADMVVNCMMTAIVACSNQAPKNFIYHVSSSLRNPFRIADVRDFSYRYFTKFPIRNKIGKLITVPKPTLISSRVAFDILMTVRYVLPLKVLNLVNEAFCQCSRDVYEDSYKKIKRVTRLVELYKPYLFFKGVFDDSNTENLRRAKSNNMEVDGLDFDPNSIDWEDYMMNTHIPGLVNYALK 488
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g01728 488 Coils Coil 187 214 - -
Vimu5g01728 488 CDD FAR-N_SDR_e 8 360 - -
Vimu5g01728 488 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 3 325 IPR036291 -
Vimu5g01728 488 Pfam Male sterility protein 12 316 IPR013120 -
Vimu5g01728 488 Gene3D - 2 368 - -
Vimu5g01728 488 CDD FAR_C 417 487 IPR033640 -
Vimu5g01728 488 Pfam Male sterility protein 391 488 IPR033640 -
Vimu5g01728 488 PANTHER MALE STERILITY PROTEIN 2-RELATED 2 488 IPR026055 GO:0080019
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g01728 Vimu-Chr5 29007863 29011389 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g01728 3 440 Acyl Lipid Metabolism Gene Families AT3G44560 48.182 1.96e-147 427
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g01728 K13356 - qsa:O6P43_028508 585.874
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu4g00758 4 5938358 5944187 Vimu5g01728 5 29007863 29011389 PCT