Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g00758 ATGAAATGCCTCGATTTAGATTCATCTCACATACCACTTTGCCTCTTCTTCATCATATCCTCATTTTCCTTTCTTTTTCCTTCTCAACACATTTTCTCCAATGGAGGTTGGAAGTGTTCTTCATTTTCTTCAAAACAAAACCATTTTAATCATTGGAGCCACAGGCTTTCTTGCCAAAAGTATAATCTCTCTCTCTCTCTCTCTCTTTCAGACTTTTTTCTGGAGAAGATATTGAGGGTTCAACCCAATGTTAAGAAGATTTATCTTCTTTTGAGAGCCTCAGATGCCAATTCTGCCACTTATCGATTGCACAATGAGATCATTGCGAAGGACTTGTTCATTGTGCTAAAGGAAAAACTGGGTGCAAATTTTAAGTCCTTCATTTCTGAAAAACTGACTCTGGTGCCGGGGGACATTTCCTATGAGGATTTGGGTTTGAAAGATTCAATTCTGAGGGAAGACATCTGCAATCAGACGGATGTTATAGTCAATTTGGCTGCAACTACCAACTTTGATGAAAGGTACGATATAGCTTTGGATATAAACACCTTTGGGGTGAAGCATGTCATGAACTTTGCCAAACAGTGTACTAAACTGAAAGTTCTTGTTCATGTATCAACAGCCTACGTATGTGGTGAGAGAGGTGGACTTATTCTAGAGGACCCCTATCACTTTGGTGAAACACTAAATGGAGTGTCTGGCCTAGACATCGATGCAGAAAAGACCATTGCGTGTAATAAATTGGATGAACTAAAAGAACAAGGAGCCACAGAACGTGATGTTAAAATAGCCATGAAGAATCTGGGTATCAGCAGGGCAAAGGTGTATGGATGGCCAAACACATACGTGTTTACAAAGGCAGTTGGAGAAATGCTTGTGGAAAAACTCAAAGGAAACCTATCTGTTGTTATTATGCGACCTACCATTGTCACAAGCACAATGAAAGAACCTTTTCCTGGTTGGGCTGAGGGTGTCAGAACCATTGACAGTTTAGCTGTTACTTATGGGAAAGGAAAGCTAACATGTTTCCTTGGAGATATCAATGGAGTTGTGGATGTGGTCCCAGCAGACATGGTGGTGAATGCTATGCTAGTGGCCATGGTGGCTCATGCAAAGCAGCCAAGTGATATCATATACCACGTGGGTTCCTCTGTTAGAAATCCAGTCACATACTTGAATCTCCAAGACTTTGGATTAAAATATTTCACTGCAAAACCATGGATAAGAAAGGATGGCACACCAGTCAAAGTTGGCAGAGTAACTGTGCTGACCAGCATGGATAGCTTTCAGAGATATATGTTCATTCGTTACCTCCTTCCATTAAAGGGACTGGAGCTGGCCAATGCTGCACTTTGTCAGTATTTTCGGGGAACATATCTTGAGCTGCATAGGAAGATCCAAGTTGTGATGCGGATGGTTGAACTTTACAGACCCTACATGTTCTTTAAGGGCCTATTTGATGATATGAACACAGAGAAGTTGAGAATGGCAGCAAAACAAAGTGGGACAGAGACAGATCTGTTTTACTTTGATACAAAAGATATTAATTGGGATGATTACTTTATGAAGACCCATATTCCTGGCATTGTCAAGTACATTTTCAAGTGA 1608 0.4067 MKCLDLDSSHIPLCLFFIISSFSFLFPSQHIFSNGGWKCSSFSSKQNHFNHWSHRLSCQKYNLSLSLSLSDFFLEKILRVQPNVKKIYLLLRASDANSATYRLHNEIIAKDLFIVLKEKLGANFKSFISEKLTLVPGDISYEDLGLKDSILREDICNQTDVIVNLAATTNFDERYDIALDINTFGVKHVMNFAKQCTKLKVLVHVSTAYVCGERGGLILEDPYHFGETLNGVSGLDIDAEKTIACNKLDELKEQGATERDVKIAMKNLGISRAKVYGWPNTYVFTKAVGEMLVEKLKGNLSVVIMRPTIVTSTMKEPFPGWAEGVRTIDSLAVTYGKGKLTCFLGDINGVVDVVPADMVVNAMLVAMVAHAKQPSDIIYHVGSSVRNPVTYLNLQDFGLKYFTAKPWIRKDGTPVKVGRVTVLTSMDSFQRYMFIRYLLPLKGLELANAALCQYFRGTYLELHRKIQVVMRMVELYRPYMFFKGLFDDMNTEKLRMAAKQSGTETDLFYFDTKDINWDDYFMKTHIPGIVKYIFK 535
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g00758 535 Gene3D - 68 418 - -
Vimu4g00758 535 Pfam Male sterility protein 437 535 IPR033640 -
Vimu4g00758 535 PANTHER MALE STERILITY PROTEIN 2-RELATED 72 535 IPR026055 GO:0080019
Vimu4g00758 535 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 124 401 IPR036291 -
Vimu4g00758 535 CDD FAR_C 435 534 IPR033640 -
Vimu4g00758 535 Pfam Male sterility protein 70 363 IPR013120 -
Vimu4g00758 535 CDD FAR-N_SDR_e 73 406 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g00758 Vimu-Chr4 5938358 5944187 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu4g00758 155 534 Acyl Lipid Metabolism Gene Families AT4G33790 58.947 1.67e-173 493
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g00758 K13356 - gmx:100805776 853.588
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu4g00758 4 5938358 5944187 Vimu4g00758 4 5938358 5944187 ECH
Vimu4g00758 4 5938358 5944187 Vimu5g01728 5 29007863 29011389 PCT