Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g01724 ATGACCGAGGTGCTTCATTTCTCCTCTTCTTCGTCGCCAACCGCTTCTTCCTCTGACGGCATTCTGATTGTCTCCGCCGAGCAAGAAACGGCGCTACCCTCGTCTGCGGTGGTGGAGGGGTTTGCTACGGTCACCGACTGTGAGGCGCGCGGGGTCACAGACACGACGCAGCAGGAGCTGTCGCTGCTGGCCATTCTTGTGACCCTTTTGAGGAAATCGTTGATTGCTTGCAAGAGTGAGGGAAGAGGTGACCTCTGCACCATGGAGATTGGCTGGCCTACTAACGTGCGCCATGTTGCGCATGTCACCTTCGACAGGTTCAACGGCTTCTTGGGCTTGCCACGTGAGTTCGAACCAGAAGTCTCCACAAGGTCCCCCAGTGCTAGTGCAACTGTTTTTGGAGTTTCAACAGAATCCATGCAGTTATCATATGACACGAGAGGGAACAGTGTTCCAACCATACTTTTACTAATGCAAAGGCATCTGTATGCTCTCGGAGGGTTGCAGGCAGAGGGGATTTTCAGAATCAATGCAGACAATACTCAGGAGGAGAATGTTAGGGATCAATTGAACAGGGGATTGGTCCCAGAAGATGTTGACATACATTGTTTAGCTGGACTGATTAAGCCCGATATATGTTCTGGTGTGATCAGAGGTGTATGTGTATGTACTGGCTACTGGGAACTGCCTACTGGTGTTCTGGATTCTTTATCACCAGAGCATGTAATGCAATGCCAAACTGAAGATGATTGTGCAGAACTGGTTAGGCAGCTACCTCACACTGAAGCATCCCTCTTGGACTGGGCTATTAATCTGATGGCTGATGTTGTCCAAGAGGAACGCCTGAATAAGATGAATGCACGCAACATTGCAATGGTTTTTGCACCGAACATGACTCATATGGCAGACCCTTTGACTGCACTGATGTATGCAGTTCAAGTGATGAACTTCCTGAAGACACTTGTATTAAGGACACTGCGAGAGAGAAAGGACTGTGTGGTAGAATCGTCTCCTGGGTTTTGCTTAGAGCCTTCTGATGAGAATGGGGATCACAGTCTTCTGGAGTCCTGCCTGCAAGATGATGTTGGCACTGAAAGTGAAGAGTCAGGAGAATCCTTTGTTTCTGAGAAAAATGTATCAGAATGTTCCCCTGAATCTCTCCAAAACAAATATTCAACTATAGGAGAATGTGGCAGTTTGATAGGCTCTTCTGAGAATCTGGATTTTGAGGAGGAATTGCTTTGTGAGTTGCCAACCAAAGGAAACCTTGGAAAGAGTAAAAGTGGACAATCAAGTGATTCCATTGCTAAAAGGGGGACCAGAAAAACCAGGGGCCTGCAACAACCTGTGATCCATGCAACAGTGTCTGCTGAGAAAAAGGGTATCAGTAATCTGAGCCGCATAGATTCAAGATCAGAGCGAATAGAAGCCTGGCGGTGA 1440 0.4778 MTEVLHFSSSSSPTASSSDGILIVSAEQETALPSSAVVEGFATVTDCEARGVTDTTQQELSLLAILVTLLRKSLIACKSEGRGDLCTMEIGWPTNVRHVAHVTFDRFNGFLGLPREFEPEVSTRSPSASATVFGVSTESMQLSYDTRGNSVPTILLLMQRHLYALGGLQAEGIFRINADNTQEENVRDQLNRGLVPEDVDIHCLAGLIKPDICSGVIRGVCVCTGYWELPTGVLDSLSPEHVMQCQTEDDCAELVRQLPHTEASLLDWAINLMADVVQEERLNKMNARNIAMVFAPNMTHMADPLTALMYAVQVMNFLKTLVLRTLRERKDCVVESSPGFCLEPSDENGDHSLLESCLQDDVGTESEESGESFVSEKNVSECSPESLQNKYSTIGECGSLIGSSENLDFEEELLCELPTKGNLGKSKSGQSSDSIAKRGTRKTRGLQQPVIHATVSAEKKGISNLSRIDSRSERIEAWR 479
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g01724 479 SMART RhoGAP_3 149 323 IPR000198 GO:0007165
Vimu5g01724 479 CDD RhoGAP 152 321 - -
Vimu5g01724 479 Pfam P21-Rho-binding domain 89 116 IPR000095 -
Vimu5g01724 479 CDD CRIB 88 128 - -
Vimu5g01724 479 MobiDBLite consensus disorder prediction 423 451 - -
Vimu5g01724 479 Pfam RhoGAP domain 152 300 IPR000198 GO:0007165
Vimu5g01724 479 SUPERFAMILY GTPase activation domain, GAP 130 322 IPR008936 -
Vimu5g01724 479 Gene3D Rho GTPase activation protein 122 330 IPR008936 -
Vimu5g01724 479 ProSiteProfiles CRIB domain profile. 90 103 IPR000095 -
Vimu5g01724 479 ProSiteProfiles Rho GTPase-activating proteins domain profile. 135 334 IPR000198 GO:0007165
Vimu5g01724 479 Gene3D CRIB domain 87 121 IPR036936 -
Vimu5g01724 479 PANTHER MKIAA1688 PROTEIN 1 384 IPR044785 GO:0005096
Vimu5g01724 479 SMART PBD_5 90 124 IPR000095 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g01724 Vimu-Chr5 28928699 28932330 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g01724 - K20642 gmx:100784019 721.85
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu5g01724 5 28928699 28932330 Vimu5g01724 5 28928699 28932330 ECH
Vimu4g00784 4 6203345 6206771 Vimu5g01724 5 28928699 28932330 PCT