Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g00784 ATGACCGAGGTCCTCCTCTCCCCACACCATTTTCCATCTTCTTCGTCACCACCACCAACAACAACAATAACAAAGACAACCTCAACCACAACAAACTCATCTCCTTCTTCTTCCTTTTCATTCTCTCGCAATGCCTTTCTCCGACCACACCTCTCTCTCCTCGCTCTTCTCTTGACCCTTCTCAGGAAATCCTTCCTTCCTCGCAAAACCATCTCCTCCCTCATGGACATTGGCTCACCAACTAACGTACGCCATGTTGCCCATGTCACCTTTGATAGGTTCAACGGTTTCTTGGGTTTGCCTGTTGAGTTTGAACCTGAAGTCCCCAGAAGGCCTCCTAGTGCTAGTGCATCTGTTTTTGGAGTTTCAACAGAATCCATGCAGTTGTCGTATGACTCCAGAGGGAACAGTGTGCCAACTATTCTGCTATTGATGCAAAGGCATCTTTATGCTCAAGGAGGGTTGCAGGTAGAGGGGATTTTCAGAATCAACGCGGACAATGGTCAAGCGGAGCATGTGAGAGATCAATTGAATATGGGAGTGGTTCCAGAAGGCATTGACGTACATTGTTTGGCAGGGCTAATTAAGGCTTGGTTTAGGGAACTTCCTACGGGCATTCTGGATTCATTATCGCCGGAGCAGGTCATGCAATGCCAGACAGAGGAGGAGTGTGCTGAAATAGTGAGACATCTACCTCATACTGAAGCTTCACTCTTGGACTGGGCCATCAATCTGATGACTGATGTTGTTCAACATGAACATGTTAATAAGATGAATGCACGTAACATTGCCATGGTTTTTGCTCCAAACATGACTCAGATGGCCGACCCTATATCTGCACTGATGTATGCAGTTCAAGTAATGAACTTCTTGAAGACACTCGTATTAAGGACACTGCGGGAAAGAAAGGATTCTGTGGTAGAATCTAATCCTAGATTTTATGTAGAACCTTCTGATGGTGATGGAAGCCATAGACTTTTGGAGTCCTTCCAGCAAGATACTCCTGCACAAAATGAAGTGGCTCAGGGAAGCACTGTTTTAGAGAAAACTGGCGTAGAGTGTTCCACTGGATCAGTCCAAAACAACTCAACTGAAGAAGAACCTGGCTCTCTGGCAAACTCTTCTGAGAATCTTGTTAGCAATGAGGAATTATATTGTGAGTTTCCACCCGTAGGAAACATGGGAAAGGGTAAAAGTGGCCAATCAAGTAAATCAAATGGTAAAAAAGAGTCTAAAAAGACTAGAGGCAGCAACCCATAA 1260 0.45 MTEVLLSPHHFPSSSSPPPTTTITKTTSTTTNSSPSSSFSFSRNAFLRPHLSLLALLLTLLRKSFLPRKTISSLMDIGSPTNVRHVAHVTFDRFNGFLGLPVEFEPEVPRRPPSASASVFGVSTESMQLSYDSRGNSVPTILLLMQRHLYAQGGLQVEGIFRINADNGQAEHVRDQLNMGVVPEGIDVHCLAGLIKAWFRELPTGILDSLSPEQVMQCQTEEECAEIVRHLPHTEASLLDWAINLMTDVVQHEHVNKMNARNIAMVFAPNMTQMADPISALMYAVQVMNFLKTLVLRTLRERKDSVVESNPRFYVEPSDGDGSHRLLESFQQDTPAQNEVAQGSTVLEKTGVECSTGSVQNNSTEEEPGSLANSSENLVSNEELYCEFPPVGNMGKGKSGQSSKSNGKKESKKTRGSNP 419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g00784 419 PANTHER MKIAA1688 PROTEIN 21 414 IPR044785 GO:0005096
Vimu4g00784 419 ProSiteProfiles Rho GTPase-activating proteins domain profile. 122 307 IPR000198 GO:0007165
Vimu4g00784 419 SMART RhoGAP_3 136 299 IPR000198 GO:0007165
Vimu4g00784 419 MobiDBLite consensus disorder prediction 403 419 - -
Vimu4g00784 419 Gene3D Rho GTPase activation protein 110 306 IPR008936 -
Vimu4g00784 419 SMART PBD_5 77 111 IPR000095 -
Vimu4g00784 419 MobiDBLite consensus disorder prediction 353 419 - -
Vimu4g00784 419 SUPERFAMILY GTPase activation domain, GAP 117 295 IPR008936 -
Vimu4g00784 419 CDD CRIB 75 115 - -
Vimu4g00784 419 Pfam RhoGAP domain 139 273 IPR000198 GO:0007165
Vimu4g00784 419 CDD RhoGAP 139 294 - -
Vimu4g00784 419 Gene3D CRIB domain 73 107 IPR036936 -
Vimu4g00784 419 MobiDBLite consensus disorder prediction 1 38 - -
Vimu4g00784 419 ProSiteProfiles CRIB domain profile. 77 90 IPR000095 -
Vimu4g00784 419 MobiDBLite consensus disorder prediction 7 38 - -
Vimu4g00784 419 MobiDBLite consensus disorder prediction 353 381 - -
Vimu4g00784 419 FunFam Rho GTPase-activating protein 5 107 300 - -
Vimu4g00784 419 Pfam P21-Rho-binding domain 76 103 IPR000095 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g00784 Vimu-Chr4 6203345 6206771 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g00784 - K20642 gmx:100776004 606.29
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu4g00784 4 6203345 6206771 Vimu5g01724 5 28928699 28932330 PCT