Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g01690 ATGGGTGTGTTCACTGAAGACCTAAATCCAATTGTCATCCGTGAAGTATGGGCATCCAATATAGAATCTGAATTCCAACTCATCCGGGAGTTAATTGATCGATACCCTTTTATCTCCATGGACACTGAGTTTCCTGGAGTGATTTTCCGGCCGCAGGTTGATCCTACCAAACCCTACAACCACCGCACGCGCCGCCCTGCCGACCACTACCGTCTCCTCAAGTCCAACGTTGACGCGCTCAACCTCATCCAGGTCGGCCTTACACTGTCTGACTCAGCCGGCAACCTCCCTGGCGATGCCGGAAATCGCTTCATCTGGGAGTTTAATTTCCGTGACTTTGATGTGGCGCGTGACACTTACGCGCCGGACTCCATCGCACTCCTCCGCCGCCAGGGGATCGACTTCGAGCGCAACGCCACCAACGGTGTGGACTCAACCCGCTTCGCGGAGCTGATGATGTCTTCAGGACTCGTGTGCAACGACGCCGTGAGCTGGGTCACCTTCCACAGCGCTTACGATTTCGGGTATTTGGTTAAGATCCTTACCCGACAGGATTTACCGACACGATTGGAGGAATTTTTAAACGTTGTGAAAGTGTTCTTTGGAGATAACGTTTACGATGTGAAGCACATGATGAGGTTCTGTGATACACTCTACGGTGGTTTGGATCGGGTTGCTCGGACGCTTAACGTGGACCGCGCCGTAGGGAAGTGCCACCAGGCTGGGTCAGACAGCTTACTGACCTGGCACGCGTTCCAGAAGATTGTGGATCTTTATTTTGTTAAGGATGAACACCAAAAACACGCTGGTGTGTTGTTTGGATTAGAAGTTCTCTGTTAA 840 0.5179 MGVFTEDLNPIVIREVWASNIESEFQLIRELIDRYPFISMDTEFPGVIFRPQVDPTKPYNHRTRRPADHYRLLKSNVDALNLIQVGLTLSDSAGNLPGDAGNRFIWEFNFRDFDVARDTYAPDSIALLRRQGIDFERNATNGVDSTRFAELMMSSGLVCNDAVSWVTFHSAYDFGYLVKILTRQDLPTRLEEFLNVVKVFFGDNVYDVKHMMRFCDTLYGGLDRVARTLNVDRAVGKCHQAGSDSLLTWHAFQKIVDLYFVKDEHQKHAGVLFGLEVLC 279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g01690 279 Gene3D - 2 277 IPR036397 GO:0003676
Vimu5g01690 279 Pfam CAF1 family ribonuclease 16 144 IPR006941 -
Vimu5g01690 279 SUPERFAMILY Ribonuclease H-like 12 274 IPR012337 -
Vimu5g01690 279 FunFam Putative CCR4-associated factor 1 7 4 278 - -
Vimu5g01690 279 PANTHER CCR4-NOT TRANSCRIPTION COMPLEX SUBUNIT 11 276 IPR039637 GO:0004535|GO:0030014
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g01690 Vimu-Chr5 28583941 28584780 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g01690 K12581 - gmx:100811298 501.516
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu4g00810 4 6398801 6399664 Vimu5g01690 5 28583941 28584780 PCT