Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g00810 ATGGGTGTGGTCGACCCAGACTCTTCTCATTCCCAATCCAATCGGATCCTGATCCGTCAGGTCTGGGCCTCCAACCTTCAATCGGAGTTCCAGATCCTTCGCGACGTAATCGACGATTACCCTTTTGTGTCCATGGACACGGAATTCCCCGGAGTTATTTACCTCCCCCAAGTGGTTTCTCCGACGGAACCCGCCCGCCGCCATCTTAAACCCTCCGAGCACTACGGCTTCCTCAAATCCAACGTTGATGTCCTCAACCTTATCCAGGTCGGACTCACGCTTTCCGATGCAGACGGTAACCTGCCCCACCTCGGGACCAGTAACCGTTTCATATGGGAGTTTAACTTCCGTGATTTCAACGTGGAGCGTGATTCCCACGCGCCGGACTCGATCGATCTTCTCCGCCGTCAGGGGATCGACTTCTGGCGCAATGCGGCGGAAGGCATTGACTCGTGGCTTTTCGCAGAACTGATGATGTCATCGGGGTTGGTGTGTAACGAGGCGGTGAGTTGGGTGACGTTTCATAGCGCGTATGATTTCGGGTATTTGGTTAAGATTCTGACCCGACGGAGCCTGCCCCATGGGTTGAAGGATTTCTTGAAGATTTTGAAAGCGTTTTTTGGAGAAAATGTTTATGACATCAAGCACATGATGCGGTTCTGTGACAGCCTCTATGGCGGTTTGGACCGGCTGGCGCTAACCCTCAACGTGGACCGGGCCGTTGGGAAGTGTCACCAGGCCGGGTCCGATAGTTTGCTGACGTGGCATGCGTTTAAGAGAATGAGGGATATTTATTTCCCGAATGGGCCCCAGAAACATGCCGGTGTTTTGTTTGGATTGGAGCTTGCCTATTCCTCTAGTTGA 864 0.5301 MGVVDPDSSHSQSNRILIRQVWASNLQSEFQILRDVIDDYPFVSMDTEFPGVIYLPQVVSPTEPARRHLKPSEHYGFLKSNVDVLNLIQVGLTLSDADGNLPHLGTSNRFIWEFNFRDFNVERDSHAPDSIDLLRRQGIDFWRNAAEGIDSWLFAELMMSSGLVCNEAVSWVTFHSAYDFGYLVKILTRRSLPHGLKDFLKILKAFFGENVYDIKHMMRFCDSLYGGLDRLALTLNVDRAVGKCHQAGSDSLLTWHAFKRMRDIYFPNGPQKHAGVLFGLELAYSSS 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g00810 287 FunFam Putative CCR4-associated factor 1 7 8 284 - -
Vimu4g00810 287 Gene3D - 4 283 IPR036397 GO:0003676
Vimu4g00810 287 Pfam CAF1 family ribonuclease 21 149 IPR006941 -
Vimu4g00810 287 SUPERFAMILY Ribonuclease H-like 13 279 IPR012337 -
Vimu4g00810 287 PANTHER CCR4-NOT TRANSCRIPTION COMPLEX SUBUNIT 17 281 IPR039637 GO:0004535|GO:0030014
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g00810 Vimu-Chr4 6398801 6399664 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g00810 K12581 - gmx:100817875 469.929
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu4g00810 4 6398801 6399664 Vimu4g00810 4 6398801 6399664 ECH
Vimu4g00810 4 6398801 6399664 Vimu5g01690 5 28583941 28584780 PCT