Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g01683 CTAAAATCGGCATGTGTACCCAATAAGCAACACATACATTTTGTATTATATATTTATTTATTACTGCTATTATTATTTTCATTACATATATACTTACTCATTCACACACACGTCCCACTCCAACCCATTATTCCTCCAAGTAATTCCCCAACAGCCACCATGTCCACCAAGGACTGCGGCCACCACCACTCTTCGAGCCGCCGTCTCATCCGTCTCGTCCTCGTCGGCGTCGCCGCCTTCATCCTCCTAGTCCTCTTCCTTGTTTTCCTCATATGGGTCATCCTCCGCCCGGCGAAGCCCCGCTTCACCCTCCAAGACGCCACTCTCTTCACCTTCAACCTCTCTTCCCCCATTCCCAACACCCTCTCTCTCACCATGCAGGTCACCCTCTCCGCCCACAACCCCAACTCCCGCATCGGCGTCTACTACCACGCACTCCACCTCCACGCCTCCTACCGTAGCCAGCAGATCTCCCTCCCCACCGCCCTCCCCGACACCTACCAGGGCCACCACGACTTCACCGTCTGGTCGCCCTTCCTCTACGGTAACACCGTCCCCGTCGCGCCGTTTGTTCTCGCCTCCCTGCAGCAGGACCAGAATGCCGGCACCGTTATGGTCAACGTTAAGATCAACGGGAGAGTGAAGTGGAAGGTCGGAACTTGGGTCTCTGGAAGGTACCACATTTATGTTAACTGTCCCGCGTATATTAGCTTCGCCGGAGATCGGAGCAATGCCGAAGGAGTGAAGTTCCACCTCTTGCAAAGTTGTAGCGTTGATGTGTAG 783 0.5402 LKSACVPNKQHIHFVLYIYLLLLLLFSLHIYLLIHTHVPLQPIIPPSNSPTATMSTKDCGHHHSSSRRLIRLVLVGVAAFILLVLFLVFLIWVILRPAKPRFTLQDATLFTFNLSSPIPNTLSLTMQVTLSAHNPNSRIGVYYHALHLHASYRSQQISLPTALPDTYQGHHDFTVWSPFLYGNTVPVAPFVLASLQQDQNAGTVMVNVKINGRVKWKVGTWVSGRYHIYVNCPAYISFAGDRSNAEGVKFHLLQSCSVDV 260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g01683 260 PANTHER OS05G0367900 PROTEIN 73 258 IPR044839 GO:0098542
Vimu5g01683 260 Pfam Late embryogenesis abundant protein 129 232 IPR004864 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g01683 Vimu-Chr5 28538180 28539139 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g01683 62 232 EF-hand Containing Proteins AT5G21130 22.222 5.21e-07 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g01683 - - gmx:100819285 324.709
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu4g00812 4 6412462 6413124 Vimu5g01683 5 28538180 28539139 PCT