Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g00812 ATGACCAAGGACTGCGGCCACCACAATCAGGATCGCCAGCAGCTCCTCCGCCGCGTATTCGCCGCCATCCTCGCCTTCATCCTCCTCGTCCTCCTCGTAATCTTCCTCATCTGGATCATCCTCCGCCCCACCAAACCCCGTTTCGTCCTCCAAGACGCCACCGTCTACGCATTTAACCTCTCCTCCAGCGGCGCCATCCCCTCCCCATCCGCCCCCACCCCCAACACTCTAACCCTCACCATGCAGGTCACTCTCTCCGCCTTCAACCCCAACCACCGCATCGGCGTCTACTACACCAAACTCGACGCTTACGCCTCCTACCGCGGCCAGCAAGTCTCCCTCGCCACCGCCCTCCCCCCAACCTACCAGGGCCACCGCGACACCGCCGTCTGGTCCCCTTTTCTCTACGGCACCGCCGTCCCCGTCTCCCCCTTCATCCTAGAGATTCTCCAGCAGGACAAAACCTCCGGAGGAGTGCTGGTGAACGTCAAAGTCAACGGCAGAGTGAAGTGGAAAGTGGGGACTTGGGTCTCCGGAAGGTACCATATTAACGTGAACTGCCCCACGTACATCAGACTCGCCGGTGACGATGAGGACGCCATCGGGGTAGCGTCTCCGGCTGTGAAGTTTCAGCTTTTTCAAAGTTGCATTGTTGATGTTTAG 663 0.5973 MTKDCGHHNQDRQQLLRRVFAAILAFILLVLLVIFLIWIILRPTKPRFVLQDATVYAFNLSSSGAIPSPSAPTPNTLTLTMQVTLSAFNPNHRIGVYYTKLDAYASYRGQQVSLATALPPTYQGHRDTAVWSPFLYGTAVPVSPFILEILQQDKTSGGVLVNVKVNGRVKWKVGTWVSGRYHINVNCPTYIRLAGDDEDAIGVASPAVKFQLFQSCIVDV 220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g00812 220 PANTHER OS05G0367900 PROTEIN 17 202 IPR044839 GO:0098542
Vimu4g00812 220 Pfam Late embryogenesis abundant protein 84 187 IPR004864 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g00812 Vimu-Chr4 6412462 6413124 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu4g00812 20 187 EF-hand Containing Proteins AT5G21130 23.077 2.12e-06 45.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g00812 - - pvu:PHAVU_005G120900g 392.889
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu4g00812 4 6412462 6413124 Vimu4g00812 4 6412462 6413124 ECH
Vimu4g00812 4 6412462 6413124 Vimu5g01683 5 28538180 28539139 PCT