Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g01653 ATGGAGTTTTACTCTCTTCCCAAACTCTACCTTCTCTTTTCCTTATCCATTTTCTTTCTTTCACCCTTTCAAGCACAAGCTGCAACTCAAATCTCTTACTGCGTATATTTATTTTTCCACTCAACAATCCTTGCAGATAAGAAGGCAAACTATCCTGTGAAGGTGACTGGAGTTGATATATCACCAGACCCTGTGAAGAGTGGCAATCCGGCTACCTTTAAGATCTATGCTACTTCAGGTAAATCTATCCTTGGTGGAGAGGTAGTAATTGGAGTTTCATACGTTGGGGTGCCTGTCCATACAGAAAACATTGATCTTTGTAACGAAGTGAAGTGCCCTGTTTCTAATGGCAATTTTGTGATTTCACACACCCAAACATTGCCTGTGATTACTCCACCGGTTAGTTTCATTTTATCACTATCTTACCAATGCTGA 435 0.4023 MEFYSLPKLYLLFSLSIFFLSPFQAQAATQISYCVYLFFHSTILADKKANYPVKVTGVDISPDPVKSGNPATFKIYATSGKSILGGEVVIGVSYVGVPVHTENIDLCNEVKCPVSNGNFVISHTQTLPVITPPVSFILSLSYQC 144
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g01653 144 Pfam ML domain 47 140 IPR003172 -
Vimu5g01653 144 SUPERFAMILY E set domains 50 137 IPR014756 -
Vimu5g01653 144 PANTHER NIEMANN PICK TYPE C2 PROTEIN NPC2-RELATED 8 136 IPR039670 GO:0015918|GO:0032934
Vimu5g01653 144 SMART pgtp_13 31 144 IPR003172 -
Vimu5g01653 144 Gene3D - 45 143 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g01653 Vimu-Chr5 28124830 28130216 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g01653 - - pvu:PHAVU_011G100100g 199.904
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu4g00847 4 6773638 6776134 Vimu5g01653 5 28124830 28130216 PCT