Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g00847 ATGGAGTTTCAGCTTCACCCAAAGCTCAATAATCTTTTATGCTTATTCATCATTACCCTTTCATTTGCCCACGCTCAAGCTACTACCTTTGGATACTGCGCTGATGTGAACTATGCCGTGAAGGTGTCTGGAGTTGAAATCACACCAGACCCTGTTGTGCGTGCTAGGCCTGTAACCTTCAAAATTTCTGCTGCTAGTGGTGAAGCTATTTATGGAGGAAAGTGGGAAATTACAGTTTCATACTTCGGATTTGTTGTCCATAAAGAAATCCATGATTTTTGTGAGCAAGTATCTTGTCCTGTTGCTACTGGCAGTTTTGTGGTTGCTAACACCCAAAAGTTGCCTGCATTTGCCCCACCGGGCACCTACACCGTGGAGATGACACTAAAAAACGTAAAGAACAAGCCATTAACTTGCATCACATTTAATTTAAAGATCGGTTTGGGATCTTTTCTGTCTAATATCTGA 468 0.4188 MEFQLHPKLNNLLCLFIITLSFAHAQATTFGYCADVNYAVKVSGVEITPDPVVRARPVTFKISAASGEAIYGGKWEITVSYFGFVVHKEIHDFCEQVSCPVATGSFVVANTQKLPAFAPPGTYTVEMTLKNVKNKPLTCITFNLKIGLGSFLSNI 155
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g00847 155 Gene3D - 28 147 - -
Vimu4g00847 155 FunFam Putative phosphatidylglycerol/phosphatidylinositol transfer protein isoform A 28 149 - -
Vimu4g00847 155 PANTHER NIEMANN PICK TYPE C2 PROTEIN NPC2-RELATED 12 146 IPR039670 GO:0015918|GO:0032934
Vimu4g00847 155 SMART pgtp_13 30 144 IPR003172 -
Vimu4g00847 155 SUPERFAMILY E set domains 27 146 IPR014756 -
Vimu4g00847 155 Pfam ML domain 28 146 IPR003172 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g00847 Vimu-Chr4 6773638 6776134 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g00847 - - gmx:100818265 258.455
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu4g00847 4 6773638 6776134 Vimu4g00847 4 6773638 6776134 ECH
Vimu4g00847 4 6773638 6776134 Vimu5g01653 5 28124830 28130216 PCT